RNA id: TU693227



Basic Information


Item Value
RNA id TU693227
length 345
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G608887
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41954174 ~ 41956189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTGATCAATCTCATTTAATTAATTTCTGTACAAAATGAGAACGCATACCATACAAACTGTACATTTATAACATGCCAACAAAATACTATTGCCACAGCAAAAAGGGGGGGTGGGGAAAGAATGTGCCCATCTTCAAATTCTTGTTGTTCTTGGGAGGCAGGTATATTTGGCAAATCACTCCATTTCAGTGAAGCGGGCAAACATGGCTTTGCGGACAGCGTCTTTGTAAGTGTCTGAGGCAGACAGGCCGTAGCTGCTGCCTTTGGTTCCCAGACCAGCTCCCTTCGCCCTCAGCTGGGCCTGTAGGGAGGTGACAGCAGGTCTGAGATAAGTAAAGCCGTTC

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU693178 lncRNA downstream 92938 41862269 ~ 41862560 (-) True G608841
TU693167 lncRNA downstream 94414 41844393 ~ 41861084 (-) True LOC110527778
TU693114 lncRNA downstream 133920 41819143 ~ 41821578 (-) True G608782
TU693064 lncRNA downstream 254990 41700297 ~ 41700508 (-) True G608748
TU693061 lncRNA downstream 256615 41698671 ~ 41698883 (-) True G608745
TU693306 lncRNA upstream 100077 42056266 ~ 42059029 (-) True G608954
TU693308 lncRNA upstream 103036 42059225 ~ 42059315 (-) True G608956
TU693453 lncRNA upstream 301025 42257214 ~ 42257467 (-) True G609094
TU693488 lncRNA upstream 332972 42289161 ~ 42289483 (-) True G609129
TU693500 lncRNA upstream 344908 42301097 ~ 42301355 (-) True G609141
LOC110527780 mRNA downstream 29890 41880174 ~ 41925608 (-) True LOC110527780
XR_005052578.1 mRNA downstream 81693 41856525 ~ 41873805 (-) False LOC110527779
XR_005052579.1 mRNA downstream 81693 41858345 ~ 41873805 (-) True LOC110527779
XR_005052580.1 mRNA downstream 81695 41856525 ~ 41873803 (-) False LOC110527779
XM_036983259.1 mRNA downstream 81704 41855223 ~ 41873794 (-) False LOC110527779
XM_021609305.2 mRNA upstream 811898 42768087 ~ 42773999 (-) True edem1
XM_021609307.2 mRNA upstream 819288 42775477 ~ 42793038 (-) True LOC110527792
XM_021608268.2 mRNA upstream 849153 42805342 ~ 42808088 (-) False LOC110527110
XM_036984482.1 mRNA upstream 849153 42805342 ~ 42815037 (-) True LOC110527110
XM_021609308.2 mRNA upstream 886524 42842713 ~ 42845808 (-) True si:ch73-361p23.3
TU693231 other downstream 4254 41944571 ~ 41951244 (-) True G608888
TU692186 other downstream 606599 41156670 ~ 41348899 (-) False LOC110527764
TU693245 other upstream 12380 41968569 ~ 42025704 (-) True G608900
TU694523 other upstream 879558 42835747 ~ 42836069 (-) True G610047
TU694690 other upstream 1150938 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 1152419 43108608 ~ 43112038 (-) False G610182
TU694702 other upstream 1156959 43113148 ~ 43116144 (-) True G610190

Expression Profile