RNA id: TU693306


Basic Information

Item Value
RNA id TU693306
length 2327
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G608954
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42056266 ~ 42059029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTTAATTGTCAGACTAAAACTGTCCCAGCTATTTACACTATACAAGCTAGATATGCATCAAGAATATAAAGGGTTTACATTTATATACATTATTTATATAAGCCGCTTTATAAGCCCAAAATTCATATATAACTTGTTATTCACTCAGTCCTTTAATTTCCTTAGAAATAAATTGCAAAGGTAAAACaagagctacaacaacaggttaaCTGGCTGGCATAGTTTGGGTATAAGAGAAAGAGGCAAAATGTTGAGAATGTCGCCTCTGACATTATAATAGGGGTAGCAAAGCTCTAAAGTTGAAGAGCAAGGCCTCTCAGAGAGAAACAGTTAGGTAGTAGCTAGATATGTAGACACAATCCCAGACAGAAGAGGCCTAATCCCAGTCTATGGCAAACTGTTGCCTCCTTGACTGGTCTTGACCAGGCTTGATGAGTAAAAGAAACAGCTCAATAACATTctattgattacaaattacaaaTCAATTAATGTACACAAGAGAAAGCAACACCGGCTACAGTGTTTTAGAATAAAATAAGAAAGGAACAATCGTCTTACATACATTACGTAGGACTTGCCAGGATATATTGGTAACAATGTTATTACAATGCTATTTATGTTTTTTGAGAGATACGACGTCACAGTGTTGAATGTTGCACTACACAATTGAGAAGCCTTAAGAAGGGGCATTGGGCTATCGAATCAAACTAAATCTAACAATCACAATTCACTTAATTGTCAAACTGTACTTGATCACAAGAGCTCACTGTTAGAGACCAGATACGTTTTGGAAATAGAGCCCAAACATCAACGTATTATGGATTGAATATCACAGTAGTTACGGTAAATTAATGAATTAAATCAGCCAATCACCAGACAGACTGGACAGGTGACACATCAGCTTTCCTTCACTAAAACTTCCAACCACAAGATCAATCACAAAACAAGTGGAAAAGAGATATTAAAATACAATATAGAGTAGTTCAACAACATGGACGGACCGTATGTCACAACTAACACATAACTAAAACACGTTTCCTACATATTTTGTCATGCCAAAAACAGTAAGCTTAACCATTCGTAGTAACTGAAAGGGTTCACCTGAACTGTACTGAATTTAAACGAGGGTTTACAAATGAATTGTAGAAATATAAGTATGAGTGAAATATGTGCTATTAGTGTTAAAAAGGCTAGTTTAAGTTGTTGATCTTAATTTAAAACACAATTGATCATAAAAATCAGTCAATTCTGTATCTAGGATGTCAGTTGATCATCTAACTAACATGAATGTAAAAGGCTCTATATGTTTTTTCTTCTTAATCAGCTCAGTGCCCTATAGCTCACCTCCTACACATTCAACTGTCATCAAAACCCTCCAATATGCAAAATCATCGAATATAGACTGCGCATACCATCTATAAGGTCTATCAAGATACCTGATCATATAGTTAAATACTTTGTTCTGAGGTCCATTAGCTCACttgtgaaatttaaaaaaaacatggatatagctagttaaataaatatacattACTGTTTCAACGAAAAGGCTATGTGTGTGGTTGGTTGAACGCCACGCCTCCATTATctgagtgtactgtatgtaccagGGATGCAGCAAGAGTTAAACACCATAATGCATCATGGGACTAAGCCCAACAACCACAAACCACATTCAACCTTAGCTTTGGCACATAAAACAGCTCAGGCTAAATGCACTCTTGTGAGAAAACATATACTGTATCTTTGTGTGCTCGTGCCAATAGAATATTAGGAAACGCCTACTACCCTTTGATGGTTAAGTTGAGTGCTACTGGCACAAAGTGATAGACAGGATACAAAGACAGCCACAGACTCTTTGTTTTACAGCACTCACCTAATCTATAGATGTAGCTATTTCTTCTATTGACAAAATGTCAGATTTTCTCATACAAAGATGCCAAATGACATGTAATGTATAGAACATGTgctttcctttccttcctttaCATAGCGATTCAACCATATCTCCATCTGTGCTTCTTCTGTACAGTACTAGCTGCAGTTGACATGAATTAAGGCGTCGGAGGGAAAGAAACAGGGGATAGTGCATCAATTACATGAAACAGTtctaaaaaacacacacacactcctaggcATCCCCTCAAAGCCCCTGCCAGCCCCTTGCCGACCCCGGCCTGCTCAGTGCAGAGGGCAGCCTCTAGTGGCCACCGCCAGAGTTGCTGCTCCCCGTTGTCCAATCAATGATGATGAAGCTCAAACTCATGATCATGAAGGCGACCCCCAGACCAGCGAAACAGGCGGCCTGGGAGGACAGAGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693228 lncRNA downstream 100077 41954174 ~ 41956189 (-) False G608887
TU693229 lncRNA downstream 100077 41954174 ~ 41956189 (-) False G608887
TU693227 lncRNA downstream 100077 41955498 ~ 41956189 (-) True G608887
TU693178 lncRNA downstream 193706 41862269 ~ 41862560 (-) True G608841
TU693167 lncRNA downstream 195182 41844393 ~ 41861084 (-) True LOC110527778
TU693308 lncRNA upstream 196 42059225 ~ 42059315 (-) True G608956
TU693453 lncRNA upstream 198185 42257214 ~ 42257467 (-) True G609094
TU693488 lncRNA upstream 230132 42289161 ~ 42289483 (-) True G609129
TU693500 lncRNA upstream 242068 42301097 ~ 42301355 (-) True G609141
TU694214 lncRNA upstream 320178 42379207 ~ 42382376 (-) True G609757
LOC110527780 mRNA downstream 130658 41880174 ~ 41925608 (-) True LOC110527780
XR_005052578.1 mRNA downstream 182461 41856525 ~ 41873805 (-) False LOC110527779
XR_005052579.1 mRNA downstream 182461 41858345 ~ 41873805 (-) True LOC110527779
XR_005052580.1 mRNA downstream 182463 41856525 ~ 41873803 (-) False LOC110527779
XM_036983259.1 mRNA downstream 182472 41855223 ~ 41873794 (-) False LOC110527779
XM_021609305.2 mRNA upstream 709058 42768087 ~ 42773999 (-) True edem1
XM_021609307.2 mRNA upstream 716448 42775477 ~ 42793038 (-) True LOC110527792
XM_021608268.2 mRNA upstream 746313 42805342 ~ 42808088 (-) False LOC110527110
XM_036984482.1 mRNA upstream 746313 42805342 ~ 42815037 (-) True LOC110527110
XM_021609308.2 mRNA upstream 783684 42842713 ~ 42845808 (-) True si:ch73-361p23.3
TU693245 other downstream 30562 41968569 ~ 42025704 (-) True G608900
TU693231 other downstream 105022 41944571 ~ 41951244 (-) True G608888
TU692186 other downstream 707367 41156670 ~ 41348899 (-) False LOC110527764
TU694523 other upstream 776718 42835747 ~ 42836069 (-) True G610047
TU694690 other upstream 1048098 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 1049579 43108608 ~ 43112038 (-) False G610182
TU694702 other upstream 1054119 43113148 ~ 43116144 (-) True G610190
TU694694 other upstream 1068782 43127811 ~ 43149026 (-) False G610183

Expression Profile