RNA id: TU693885


Basic Information

Item Value
RNA id TU693885
length 2790
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G609482
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42919954 ~ 42922980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTGGGACTTATTTCCTACAATTTGTAGACTAAATACAGAATTCATACATCAAACTCCTGCATAGCTGGATGCTGATGTGACATGCTGTGACTTATTGTGTGGGGGATGTCTTCTACACCCAGAAATATATTCCTTGGGGGGgttattattatttactattaTTGTTATAACTATCAAACTTAACAACCTACTCTTTCTTAATGTACGCTCTGTACATTGCAATGGAAGCAGTGTAATTTCACTGAAGTATGTATAAATTATGAAATTCTCATCACTAGTGGGTATGTTTTTTTAGGATCCCCTTCCGACTGTGATTTTCTTTATCAAAGGAAAACATGCAGCAAATAAGGCAATGGTGGTGCCTATTTCACCTCTCCTGTAGAACGTTCCCATGCCGATGATGTAGAAgattccccccaccccccccaagaAGTCACAGCATGTCACATCAGCATCCAGCTCTGCAGGATCAGGTACTGTATAGGCTATTAGATAAAGTAAGAGGCATTCTTGACACACATCCCTAGATTTTCCGTTACATTATTTAATGACCACAATCTGTTTTCTCAGTAGACTATACTGAAAACAAAATGCACGGCGAACTGTGAGCTGGGTATGtagtctactgtgtgtaatgctgAAGGCTTGATGTATGGAAAGATATAATAGCTGTGATGACTTGTTGAGTAGTTATAGATATCACTGAAAACCCCTTTAGTAATAGTGGCTTTTGTTTGCATGGTGGTATTGTGAAAGTGGGGTGTAATTGTTCTTGATCACCCAATGAGGCACTACTCCTAATATTAATTATTCctttttcttagaggaagcagATCTTCTAAGGGACACCCTAGAGGCACGCCAAAACATTTAAAGGAACCGTTCCCCTCCCTACTGTAATTGGGATAGGCGGGGAAGACCGCATCACAACCCCTAAAGAACTACAGTCACCTGAGTCGCTGATCTCTTTACTGGAGCTGGTATAACTTAATGTACAAAGCCCATTCAGCttgtcagtatgtttatatgatATAGTCTGTCTCCATTCTCATGAGGAAAATAAATGGCATAACTCAGGATAGGTAGTAACTGTATATTTATGTTCAATTAAATAATATAATTACAAAGTTATAACATTCATCAACACAATTTTAACAGTACATGACACGGATAACAAGTATATTGTTCACTGCATCATCAGTAGCTTGCTCAAACTGAGCCCGGCCCAAATTGCACACTGCAGTCAGGGGTACTTGGATTTCGGCGTGTTAtccagtaaaaaatatatatacaaaagtcaGTTGCTAATAAGGAGCTGGTTTCGGCGGGGTTTGTTGCTGATAGCTGGCACTGGGACAAGCGGTAACATATTGCAGTAGTCAGACACGACATGAAGCATCAATATCGTTGGATCCTTCATTTGTTTTTGCACTGATGTTACACAAATGTTTCAGAACAGTCGGCCCTTTAAATGCTACTGTTATATCTAACTAGCTAACGCTACATCCTATCAAACCTGTAGTCTGATGTGTATGGTTAGCCCGCTAGCTAATATAGCCAATGTTAGGGCAAGCAAGGTTAGGACTCTAGCTAGACTGTTGTGCTAGCGACGATGCTAACcgtttagctagcaagctaaacaTTTGGCTAGCTGGCATCAAACATCACGTTAGTTAGGTGAGGGTGAATTACATTATTCAACATATTGCTAGatttctatttaactaggcaagtcagttaaaaccaaattcttatttacaatgacggcctaggaacagtgggtttactggcttgttctggggcagaacgacacatttttaccttgtcaactcggggattcgatctagcagccTTTCAGTTATTgggccaatgctctaaccactaggctacctggataGCCAAATTACTTTATATTTCTAGTTAACTAACAACATCAGCGTAGCTAGTCACATTGGCTAGCAGCAATATTCTGGAGGAAGTGGAAATGCTGATTTGAAAGTGCGAGGTTTCAGATACAATTGATAAAAAGTTGTCACGACGTGGGGCGCTGctgctctgtctcctctcattTACGTGACTCCGCTTCCATCCGGAACTCTCATGTTATTTAGAGGTGTAGCCAGACCTCACCTTGACCTACCCTCGCTTAATCTAGTTGACTTTCCAATAGGGAAAATATGTTTATCCTTGCTCCGTCAGAACAACAGATCTATACGTGCTTTATTTCAAAGGGATATTGTATCCATTCCTTATGTCACAAGTTACTGGAATACATTGGTCactaatatctgttggaaaaaagtctGGTTATTACCACACAAATACTTGCTTGTTAAAAAGGCCAAAGAGGTCTCTCAGAATGATCCATAAGTATTACCCTGCGAATCATTACCTGAAGAAACTCAAAAAGGACATTAACATTGATTGTACTTTTTGTGTTGAGCATCCAGAAACGGTTTCACATTTATTTTGGCATTGTCTACATGTAAAACAATTATGGAAAGATATTCAGTTTTAGAATTGTTAATATTCTTGATTACTTTTGTTTGTTATGGGAGAATGTTCTGCTCGGTTTCCTTAACCGTGATAAAGAAAAACTATTTTACTTCATAAATCTAATTGTGCTAatggcaaaatgtcttaaaacACTCTTCCGTGTTTTCTATAAGGAATTTGAGCAGTACATTAAGACCATTTTACATTCTTCTAATAAGAAAGCTGTTAAAAGAATCAATATGTGTGTTTCTTTTAAGGTCTTTGTATAATTTGTCATTTGTTGTACCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693889 lncRNA upstream 432 42919218 ~ 42919522 (+) True G609486
TU693907 lncRNA upstream 3450 42915831 ~ 42916504 (+) True G609504
TU693892 lncRNA upstream 29386 42890026 ~ 42890568 (+) True G609489
TU693859 lncRNA upstream 72060 42847466 ~ 42847894 (+) True G609457
TU693848 lncRNA upstream 82694 42836851 ~ 42837260 (+) True G609449
TU693915 lncRNA downstream 19751 42942731 ~ 42943096 (+) True G609511
TU693839 lncRNA downstream 22249 42945229 ~ 42952239 (+) True G609440
TU693916 lncRNA downstream 30692 42953672 ~ 42953951 (+) True G609512
TU693909 lncRNA downstream 37440 42960420 ~ 42962095 (+) True G609506
TU693890 lncRNA downstream 60726 42983706 ~ 42984145 (+) True G609487
XM_021609309.2 mRNA upstream 36274 42854920 ~ 42883680 (+) False LOC110527794
XM_021609310.2 mRNA upstream 38903 42855227 ~ 42881051 (+) True LOC110527794
XM_021609306.2 mRNA upstream 152558 42760386 ~ 42767396 (+) True gnat1
XM_036983268.1 mRNA upstream 160550 42685145 ~ 42759404 (+) False LOC110527789
XM_021609316.2 mRNA downstream 567 42923547 ~ 42930634 (+) True LOC110527799
XM_021609317.2 mRNA downstream 10003 42932983 ~ 42935248 (+) True rbp7b
XM_036983275.1 mRNA downstream 62680 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA downstream 62680 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA downstream 62680 42985660 ~ 42991364 (+) True LOC110527804
TU693833 other upstream 98709 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1089146 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1456785 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2285515 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 2479322 40439100 ~ 40440632 (+) True LOC110527751
TU694950 other downstream 487411 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 661040 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 906024 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 1079644 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 1098869 44021849 ~ 44028228 (+) True si:dkey-264d12.5

Expression Profile