RNA id: TU693839


Basic Information

Item Value
RNA id TU693839
length 2808
lncRNA type antisense_over
GC content 0.44
exon number 6
gene id G609440
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42945229 ~ 42952239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAAGTGGTACAGTGAGAATATATTCATTGGCTGAAATGTTTAGAGCACGGTTCCAACTTCATCTCCCCAACAGGTTATACTAAAAAAATCTGTTCAATAAAAAATTATTATTAAAAGGACAACTGGTGTTTCCATTTAGCTTCATTTCGACACATGCCATAACATCCTTTATGGACAGGACACTATTTCCCAGTGTGCAAGTCTGAAATAACATAACCTGTTCATTATTTGTCTTATGTCCCAAAGAATACATCAGACATAAATTACTCCTCTGCCCAAATAATGCATTCGCTTTAATTTAAAATGAAGcccattgaaaaaaataaaaaccttggTTATGTCTGACAGAATAGATCATAAATGTATCCAAACTTACTACCCAATTCTGACTCCTTTTAAGTTGGCATAAATCTAAGAGGCCCCATTTCAAGCCTGTGAGGACTTCTGTCTTCATCCTTCAGGACACTGACTCCGGTCTGGGTTCAGATGCAAACCTCGGTCAGCAGTGTCCAAGGTCCCGTCTCTTAGAACATGCGGAGTGAAGCCGTTCTTTGATGGCAAAGCATTTATAGATGGAAGAGAGTGATATTGACATCACCCAAAGAATGCTGCCAAAGAGGAGCTTCTTCCCGGGAAAATGGAAGAGAGGTGAACTGCAGAAGAGATTGTAGTGAAGGCTTTTCCATTTAACTAGAGACTGAAAATAAAGTTGCACTTAAAACATTTACGTTTCAACCAGATTCTTTCCAATGCAAGATTGTTGTCAAATATACAGATGGATAGTGAACCAGTGATTTCTCATGCATTCAGAAACATCACAACTCACAATGCATGCATCAAAGAATCCAGTTGAAAATAAGTCAGGATATAACAAACTTAAGAACAAATCAATTTGACTTCAAAAGTAGCACGACTCTGGTAAACAATAATTCATTTCAAACACTTTCTAAATTAAAATCTTGATCTCCAAATGTACAAAACAGCCTTCACAAAAGCGTTTAAGTATCAGATACGCATAACACCAGAAATAAATTAGGAAAAAGACCTCACAATACTTACCATCAAACTATTTCACATACCCCACCCGGAAGACTTGGACTCCATACTGGAGCCAAATCCTGAGCTAAACCCACTACCACTGGCTGTTGCGTTAGAACCGGTACCCCAACCTAGACTGGCTGAGTTGGTGCCGTAGTTACTGTTGCCTGTGCTGTAGGCCTGGCTCTGATCCCTGGTGGAGTTAGTCTGCCCAGTGGAGGTGGTGCCTGAGGTGGCAGTTTGCCCTTGCTGACTAGCCAACATACCCATCATTCCCCAACTGCTCTGTAGGGCAGCCTGAGCAGCAGCCATCATGGCAGGGTTCAGACTAAAGTTCCCAAAATTAGCCATATTACTACTGGCGCTGGTCCCTAACCCTGTGCGGTTACTACCAAAGCCCTGAGCCCCAAACCCGTTCCCAAACCGCCCTGCTCGCTCCGTCATCTGCCTACTGCCGTGTTTTGGCTCAGCATTTGAGATGTGCACGCTGACCCCCTTAATAATCAGGTCCTCTCCACATAGGGAACTGGCAACCTGGTCATCGGCAAAGCTGACGAAGGCAAAGGCACGGAAGGGCTTGGGGATGAAGACGTCAGTGACCTCACCATACTGCATGAAGAACTGTCGCAGTTCATCAGCGGACAAGTCTTCAGTGCAACGGCCTACAAACACTTTTCTGCTTCTCATGGGCTCATCTGGACCTTGCTTGGAGTTGGGGAGTTTGCAGTCACACCATCTTCCATCAATCATGTGGCGTTGTGAGATCACTTTGTCTTGAGTCTCATACTCAGTAAACCTCACAAAGCCAAACCCCTTTGAGTTTCCAGTCTTCACATCTCGTTTCACCTGCACCATGATGACTTCCCCAAAGGTGCTGAAGTAATCTTTCAGGTCCTGTTCAGTTGTCTTCCATGGCAACCCCAGTACAATCAGATCAGATGTCTTCATGTCACCTCTCTTCATCTTCACAGCAGAGGCGGCATCAATCTCGTCCATTTTCCTTTTATTGTCTTTGGGATAATTGACGACATAGACCAGATTGCCCCAGCCGTTCTCAGGCGCATGAAGAATCCCTTCCACCAAACGGACCCCTCTCATACACTGTGAAACAGGACTCCTGAATCGTAGGCCGCAGGCCCCAGGAAACTGAGCTGCCACGGTAGAAAGCAACACAGAGCCATCGTCCTCAGAAGGGATCTCCATGGGCTCCTCATTCTCTTCTTCGGCCACACGAATGTACAACTCTGCCATTTGTACCTACAATTACGCCTTTTCTCAGTCAAAAATACTGCACTGGCTATGTAAAATTAGCTCTCTACCCACTTCGATATGCCCGACGACTAGTTgattaatacaaaaaaaaaatagttcCGAAAATACACCGCGGTTTATAAAAAATAAGTCAGTTTAGACGTTGGACGTTGCttaaatgaaattgtatttaaaCGACTAACTAGATCTCGTGAGATTTTCAAGCAAACGAACCTGCCTCGGTCCCACTCCGTGTTCCTTTGTTAGCTTGCTCTGTCATCTACACCGGACGACCTAGCTTTAGCAATGGAGCTTTTAGTGAGCTAACGGCGTTTCGTGCCGTGTTGGTCCTAACAGTTGAAATTTCGTCCAAGTAATTTGAAATCGAGCAATCGTATAATTAACGTTAAGTCTTAACTAATATTTTCTAAAGTAGCATACACGTAATACTGCGCGTTTAGAGCAAATATTCAACCTCAAACACACCTGCGACGAAAATAAACACGCTATTCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693915 lncRNA upstream 2133 42942731 ~ 42943096 (+) True G609511
TU693885 lncRNA upstream 22249 42919954 ~ 42922980 (+) True G609482
TU693889 lncRNA upstream 25707 42919218 ~ 42919522 (+) True G609486
TU693907 lncRNA upstream 28725 42915831 ~ 42916504 (+) True G609504
TU693892 lncRNA upstream 54661 42890026 ~ 42890568 (+) True G609489
TU693916 lncRNA downstream 1433 42953672 ~ 42953951 (+) True G609512
TU693909 lncRNA downstream 8181 42960420 ~ 42962095 (+) True G609506
TU693890 lncRNA downstream 31467 42983706 ~ 42984145 (+) True G609487
TU693887 lncRNA downstream 39211 42991450 ~ 42995182 (+) True G609484
TU693937 lncRNA downstream 57305 43009544 ~ 43014662 (+) True G609533
XM_021609317.2 mRNA upstream 9981 42932983 ~ 42935248 (+) True rbp7b
XM_021609316.2 mRNA upstream 14595 42923547 ~ 42930634 (+) True LOC110527799
XM_021609309.2 mRNA upstream 61549 42854920 ~ 42883680 (+) False LOC110527794
XM_021609310.2 mRNA upstream 64178 42855227 ~ 42881051 (+) True LOC110527794
XM_021609306.2 mRNA upstream 177833 42760386 ~ 42767396 (+) True gnat1
XM_036983275.1 mRNA downstream 33421 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA downstream 33421 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA downstream 33421 42985660 ~ 42991364 (+) True LOC110527804
XM_021609332.2 mRNA downstream 75685 43027924 ~ 43035211 (+) True LOC110527808
LOC110527818 mRNA downstream 572448 43524687 ~ 43526668 (+) True LOC110527818
TU693833 other upstream 123984 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1114421 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1482060 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2310790 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 2504597 40439100 ~ 40440632 (+) True LOC110527751
TU694950 other downstream 458152 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 631781 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 876765 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 1050385 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 1069610 44021849 ~ 44028228 (+) True si:dkey-264d12.5

Expression Profile