RNA id: TU694013


Basic Information

Item Value
RNA id TU694013
length 1958
lncRNA type intronic
GC content 0.54
exon number 5
gene id G609573
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43106915 ~ 43167294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaaagcacaggaacaggagtaaagcacaggtacaggagtatagcacgaggacaggagtagagcacgggtacaggagtagagcacgaggacaggagtagagcactgcTACAGGAATAGGGCAAGGgctcaggagtagagcacaggaacaggagtagagcacaaggacaggagaagagcacgaggacaggagtagagcacgggtacaggagaagagcacgggtacaggagtagagcacaggtacaggagaagagcacgaggacaggagtagagcacaggtacaggagtagagcacgaggactggagtagagcatgaggacaggagtagagcacgggtacaggagtaaagcacaggtacaggagtagagcacgggtacaggagtagagcacaggtacaggagtagagcacgaggacaggagtagagcacgaggacaggagtagagcacgaggacaggagtagtgcacgaggacaggagtagagcatgggtacaggagtaaagcacaggtacaggagtaaagaacaggtacaggagtagagtacGGGGACAgaagtagagcacggctacaggagtagagcacgggtacatgagtagagcacgaggacaggagtagagcacggctacaggagaagagcacgggtacaggagtagagcacggctacaggagaagagcacaggtacaggagtagagcacgggtacaggagtagagcacgaggacaggagtagagcacggctacaggagtagagcacgactacaggagtagagcacgaggacaggagtagagcacaaggacaggagtagagcccgCGTACATGAGTAGAGCAAGGGCTCAGGAgtagagcaaaggtacaggagtagagcaaaggtacaggagtagagcatgggaacaggagtagagcacgagtacaggagacAAGCAAGGGTACAGAAGTAGAGCACGACTACAGAGGTAGATCAcgtgtacaggagtagagcacgagtacaggggGAGAgaacgggtacaggagtagagcacgggtacaggagtagagcacgggtacaggagtagagcacgggtacaggagtagagcacgggtacaggagaagagcacgggtacaggagtagagcaaaagtacaggagaaaagcaCAAGTACAGGAGTAGAGTACGGGTACAGGaatagagcacaggtacaggagtagagcatgaggacaggagaagagcacgaggacaggagtagagcatgggTACAGgactagagcacaggtacaggagtagagcatGAGGACAGGtgtagagcacgagtacaggagtagagcacgaggacaggagtagagcacggctacaggagtagagcatgaggacaggagtagagcacaggtacaggagtagaggatgaggacaggagtagagcacgaggacaggagtagagcacgggtacaggactagagcacaggtacaggagtagagcatgaggacaggagtagagcacaggtacaggagtagagcacgggtacaggagtagaacacaggtacaggagtagagcacaggtacaggagtagagcacgacgacaggagaagagcacgaggacaggagtagagcatgggtacaggagtaaagcacagggaaaggagtaaagcacaggtacaggagtagagcacgacgacaggagtagagcacgggtacaggagtagagcacgggtacaggagtagagaacgaggacaggagtagagcacgagtacaggagtagagcacgaggacaggagtagagcacggctacaggagtagagcaagGGTACATGAGTAGaacacgaggacaggagtagagcacggctacaggagaagagcacgggtacaggagtagagcacggctacaggagtagagcacgaggacaggagtagagcacggctacaggagtagagcacggctaaaggagtagagcacgggtacaggagtagaccacgggtacagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693999 lncRNA upstream 2614 43106915 ~ 43122709 (+) False G609573
TU693989 lncRNA upstream 2614 43117925 ~ 43122709 (+) False G609573
TU694024 lncRNA upstream 15357 43106915 ~ 43109966 (+) False G609573
TU693947 lncRNA upstream 75612 43047877 ~ 43049711 (+) False G609542
TU693948 lncRNA upstream 75612 43049101 ~ 43049711 (+) True G609542
TU694037 lncRNA downstream 6213 43169283 ~ 43170138 (+) True G609582
TU694097 lncRNA downstream 99042 43262112 ~ 43262462 (+) True G609642
TU694846 lncRNA downstream 174882 43337952 ~ 43338163 (+) True G610332
TU694857 lncRNA downstream 183122 43346192 ~ 43346700 (+) True G610343
TU694874 lncRNA downstream 196443 43359513 ~ 43359722 (+) True G610360
XM_021609332.2 mRNA upstream 90112 43027924 ~ 43035211 (+) True LOC110527808
XM_036983275.1 mRNA upstream 133959 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA upstream 133959 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA upstream 133959 42985660 ~ 42991364 (+) True LOC110527804
XM_021609317.2 mRNA upstream 190075 42932983 ~ 42935248 (+) True rbp7b
LOC110527818 mRNA downstream 361617 43524687 ~ 43526668 (+) True LOC110527818
LOC110528952 mRNA downstream 363861 43526931 ~ 43529047 (+) True LOC110528952
XM_036983289.1 mRNA downstream 373927 43536997 ~ 43545817 (+) False mon1bb
XM_036983288.1 mRNA downstream 375513 43538583 ~ 43545817 (+) False mon1bb
XM_036983290.1 mRNA downstream 375584 43538654 ~ 43545817 (+) False mon1bb
TU693833 other upstream 304078 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1294515 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1662154 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2490884 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 2684691 40439100 ~ 40440632 (+) True LOC110527751
TU694950 other downstream 247321 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 420950 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 665934 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 839554 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 858779 44021849 ~ 44028228 (+) True si:dkey-264d12.5

Expression Profile