RNA id: TU694686


Basic Information

Item Value
RNA id TU694686
length 1114
RNA type TUCP
GC content 0.55
exon number 2
gene id G610182
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43107127 ~ 43162969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtgctctactcctgtccccgtgctctactcctgtccccgtactctactcctgtacctgttctttactcctgtacctgtgctttactcctgtacccatgctctactcctgtcctcgtgcactactcctgtcctcgtgctctactcctgtcctcgtgctctactcctgtcctcgtgctctactcctgtacctgtgctctactcctgtacccgtgctctactcctgtacctgtgctttactcctgtacccgtgctctactcctgtcctcatgctctactccagtcctcgtgctctactcctgtacctgtgctctactcctgtcctcgtgctcttctcctgtacctgtgctctactcctgtacccgtgctcttctcctgtacccgtgctctactcctgtacccgtgctctactcctgtacccgtgctctactacTGTACCCGTTCTCTCcccctgtactcgtgctctactcctgtacacgTGATCTACCTCTGTAGTCGTGCTCTACTTCTGTACCCTTGCTTgtctcctgtactcgtgctctactcctgttcccatgctctactcctgtacctttgctctactcctgtacctttgctctacTCCTGAGCCCTTGCTCTACTCATGTACGcgggctctactcctgtcctcgtgctctactcctgtcctcgtgctctactcctgtagccgtgctctactcctgtagccgtgctctactcctgtcctcgtgctctactcctgtcctcgtgctctactcctgtacccgtgctctactcctgtacctgtgctcttctcctgtagccgtgctctactcctgtacccatGCTCTTCTCCTGTAACCGTGCTCTACTcttgtcctcgtgctctactcatgtacccgtgctctactcctgtagccgtgctctactcctgtcctcgtgctctactcctgtactcgtgctctactcctgtcctcgtgctctactcctgtcctcgtgctctactcctgtacctgtgctttactcatgtacctgtgctttactcctgtacccgtgctctactcctgtcctcgtgctctactcctgtcctcgtgctctactcctgtacatGTGCTCTACtcttgtacccgtgctctactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694620 lncRNA downstream 123125 42984725 ~ 42985483 (-) True G610132
TU694597 lncRNA downstream 166083 42942126 ~ 42942525 (-) True G610109
TU694591 lncRNA downstream 171987 42936397 ~ 42936621 (-) True G610103
TU694590 lncRNA downstream 172350 42935956 ~ 42936258 (-) True G610102
TU694589 lncRNA downstream 172838 42935531 ~ 42935770 (-) True G610101
TU694677 lncRNA upstream 5886 43117924 ~ 43122712 (-) True G610180
TU694767 lncRNA upstream 131161 43243199 ~ 43243449 (-) True G610254
TU694870 lncRNA upstream 241764 43353802 ~ 43354039 (-) True G610356
TU694873 lncRNA upstream 243332 43355370 ~ 43355588 (-) True G610359
TU694896 lncRNA upstream 262238 43374276 ~ 43374481 (-) True G610382
XM_036983284.1 mRNA downstream 80792 43003314 ~ 43027816 (-) True LOC110527807
XM_036983279.1 mRNA downstream 106831 42991447 ~ 43001777 (-) True LOC110527805
XM_036983278.1 mRNA downstream 106874 42991447 ~ 43001734 (-) False LOC110527805
XM_021609319.2 mRNA downstream 125772 42960419 ~ 42982836 (-) True LOC110527803
XR_005052581.1 mRNA downstream 156332 42945197 ~ 42952276 (-) True LOC110527802
XM_021609333.2 mRNA upstream 316341 43428379 ~ 43433682 (-) True LOC110527809
XM_021609339.2 mRNA upstream 324842 43436880 ~ 43438762 (-) False LOC110527812
XM_021609338.2 mRNA upstream 324842 43436880 ~ 43438771 (-) False LOC110527812
XM_021609341.2 mRNA upstream 324842 43436880 ~ 43439076 (-) False LOC110527812
XM_021609337.2 mRNA upstream 327176 43439214 ~ 43449075 (-) False LOC110527811
TU694523 other downstream 272539 42835747 ~ 42836069 (-) True G610047
TU693245 other downstream 1082904 41968569 ~ 42025704 (-) True G608900
TU693231 other downstream 1157364 41944571 ~ 41951244 (-) True G608888
TU692189 other downstream 1759709 41156670 ~ 41348899 (-) True LOC110527764
TU694702 other upstream 1110 43113148 ~ 43116144 (-) True G610190
TU694694 other upstream 15773 43127811 ~ 43149026 (-) False G610183
TU694691 other upstream 35462 43147500 ~ 43167320 (-) True G610183
TU694697 other upstream 39532 43151570 ~ 43157089 (-) True G610185
TU694680 other upstream 42311 43154349 ~ 43162969 (-) False G610182

Expression Profile