RNA id: TU694680


Basic Information

Item Value
RNA id TU694680
length 1579
RNA type TUCP
GC content 0.55
exon number 3
gene id G610182
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43107127 ~ 43162969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agccgtgctctactcctgtacccgtgctcttctcctgtagccgtgctctactcctgtcctcgtgttCTACTCATGTACCcttgctctactcctgtagccgtgctctactcctgtcctcgtgctctactcctgtactcgtgctctactcctgtcctcgttctctactcctgtacccgtgctctactcctgtacccgtgctctactcctgtcgtcgtgctctactcctgtacctgtgctttactcctttccctgtgctttactcctgtacccatgctctactcctgtcctcgtgctcttctcctgtcgtcgtgctctactcctgtacctgtgctctactcctgtacctgtgttctactcctgtacccgtgctctactcctgtacctgtgctctactcctgtcctcatgctctactcctgtacctgtgctctagtcctgtacccgtgctctactcctgtcctcgtgctctactcctgtcctcatcctctactcctgtacctgtgctctactcctgtcctcatgctctactcctgtagccgtgctctactcctgtcctcgtgctctactcctgtactcgtgctctacaCCTGTCCTCGttctctactcctgtacccgtgctctactcctgtacccgtgctcttctcctgtcgtcgtgctctactcctgtacctgtgctctactcctgtacctgtgttctactcctgtacccgtgctctactcctttCCTCTTGCTCTACTCCTTTGCTCCTTCTCTACTCCTtcacccgtgctctactcctgtagtagtgctctactcctgtcctcgtgctctactcctgtacccgtgctctactcttgTATACCCGTGCTCTAATCCTGGCCTCGTCctttactcctgtacctgtgctctactcctgtacccgtgctctactcctgtacccgtgcttttctcctgtacttttgctctactcctgtacccgtgctcttctcctgtacccgtgctctactcctgtagccgtgctctactcctgtacccgtgctctactcctttCCTCTTGCTCTACTCCTTTACTCcttctctactcctgtacccgtgctctactcttgtacccgtgctcttctcctgtagccttgctctactcctgtcctcgtgctctactcctgtcctcgtgctctactcctgttcctgtgctctactcctgagcCCTTGCCCTATTCCTGTAGCAGTGCTCTACTCCTGAcgtcgtgctctactcctgtacccgtggtctactcctgtacccgtgctctactcctgtagccgtgctctactcctgtacccgtgctcttctcctgtacccgtgctctactcctgtacctgtgctctactcctgtagccgtgctctactcctgtacccgtgctcttctcctgtagccgtgctctactcctgtcctcgtgttCTACTCATGTACCcttgctctactcctgtagccgtgctctactcctgtacctgtgctcttctcctgtagccgtgctctactcctgtacccgtgctcttctcctgtagccgtgctctactcctgtcctcgtgctctactcatgtacccgtgctctactcctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694676 lncRNA downstream 31637 43106030 ~ 43122712 (-) False G610180
TU694677 lncRNA downstream 31637 43117924 ~ 43122712 (-) True G610180
TU694679 lncRNA downstream 40042 43110853 ~ 43114307 (-) False G610182
TU694620 lncRNA downstream 168866 42984725 ~ 42985483 (-) True G610132
TU694597 lncRNA downstream 211824 42942126 ~ 42942525 (-) True G610109
TU694767 lncRNA upstream 80230 43243199 ~ 43243449 (-) True G610254
TU694870 lncRNA upstream 190833 43353802 ~ 43354039 (-) True G610356
TU694873 lncRNA upstream 192401 43355370 ~ 43355588 (-) True G610359
TU694896 lncRNA upstream 211307 43374276 ~ 43374481 (-) True G610382
TU694909 lncRNA upstream 221023 43383992 ~ 43384236 (-) True G610395
XM_036983284.1 mRNA downstream 126533 43003314 ~ 43027816 (-) True LOC110527807
XM_036983279.1 mRNA downstream 152572 42991447 ~ 43001777 (-) True LOC110527805
XM_036983278.1 mRNA downstream 152615 42991447 ~ 43001734 (-) False LOC110527805
XM_021609319.2 mRNA downstream 171513 42960419 ~ 42982836 (-) True LOC110527803
XR_005052581.1 mRNA downstream 202073 42945197 ~ 42952276 (-) True LOC110527802
XM_021609333.2 mRNA upstream 265410 43428379 ~ 43433682 (-) True LOC110527809
XM_021609339.2 mRNA upstream 273911 43436880 ~ 43438762 (-) False LOC110527812
XM_021609338.2 mRNA upstream 273911 43436880 ~ 43438771 (-) False LOC110527812
XM_021609341.2 mRNA upstream 273911 43436880 ~ 43439076 (-) False LOC110527812
XM_021609337.2 mRNA upstream 276245 43439214 ~ 43449075 (-) False LOC110527811
TU694694 other downstream 5323 43127811 ~ 43149026 (-) False G610183
TU694702 other downstream 38205 43113148 ~ 43116144 (-) True G610190
TU694686 other downstream 42311 43108608 ~ 43112038 (-) False G610182
TU694523 other downstream 318280 42835747 ~ 42836069 (-) True G610047
TU693245 other downstream 1128645 41968569 ~ 42025704 (-) True G608900
TU695019 other upstream 272609 43435578 ~ 43438743 (-) False LOC110527812
TU695015 other upstream 272920 43435889 ~ 43438743 (-) False LOC110527812
TU695007 other upstream 273914 43436883 ~ 43438812 (-) False LOC110527812
TU695009 other upstream 273914 43436883 ~ 43438812 (-) False LOC110527812
TU695010 other upstream 273914 43436883 ~ 43438913 (-) False LOC110527812

Expression Profile