RNA id: TU694960


Basic Information

Item Value
RNA id TU694960
length 266
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G610446
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43421731 ~ 43421996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacatagtaggtgaacggatgatctctgcatgtgtggttcccaccgtgaagcatggaggaggaggtgtgatggtgtgggggaactttgcaggtgacactgtctgtgatttatttcgaattcaaggcacacttaaccagcatggctaccacagccttttccagcgatacgccatcccatctggtttgctcttagtgggactatcatttgtttttcaacaggacaatgacccaacacaccttccggctgtgtaagggctcttagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694949 lncRNA upstream 11580 43409940 ~ 43410151 (+) True G610435
TU694939 lncRNA upstream 15713 43405698 ~ 43406018 (+) True G610425
TU694936 lncRNA upstream 17432 43404079 ~ 43404299 (+) True G610422
TU694931 lncRNA upstream 20664 43400616 ~ 43401067 (+) True G610417
TU694916 lncRNA upstream 34291 43387151 ~ 43387440 (+) True G610402
TU694969 lncRNA downstream 3707 43425703 ~ 43425994 (+) True G610455
TU694971 lncRNA downstream 5189 43427185 ~ 43427390 (+) True G610457
TU694987 lncRNA downstream 29084 43451080 ~ 43451342 (+) True G610471
TU694989 lncRNA downstream 30730 43452726 ~ 43453086 (+) True G610473
TU694990 lncRNA downstream 31174 43453170 ~ 43453474 (+) True G610474
XM_021609332.2 mRNA upstream 386520 43027924 ~ 43035211 (+) True LOC110527808
XM_036983275.1 mRNA upstream 430367 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA upstream 430367 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA upstream 430367 42985660 ~ 42991364 (+) True LOC110527804
XM_021609317.2 mRNA upstream 486483 42932983 ~ 42935248 (+) True rbp7b
LOC110527818 mRNA downstream 102691 43524687 ~ 43526668 (+) True LOC110527818
LOC110528952 mRNA downstream 104935 43526931 ~ 43529047 (+) True LOC110528952
XM_036983289.1 mRNA downstream 115001 43536997 ~ 43545817 (+) False mon1bb
XM_036983288.1 mRNA downstream 116587 43538583 ~ 43545817 (+) False mon1bb
XM_036983290.1 mRNA downstream 116658 43538654 ~ 43545817 (+) False mon1bb
TU694950 other upstream 10925 43410391 ~ 43410806 (+) True G610436
TU693833 other upstream 600486 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1590923 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1958562 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2787292 40634181 ~ 40634439 (+) True G606977
TU695128 other downstream 162024 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 407008 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 580628 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 599853 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU698525 other downstream 2856738 46278734 ~ 46279333 (+) True G613664

Expression Profile