RNA id: TU694971


Basic Information

Item Value
RNA id TU694971
length 206
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G610457
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43427185 ~ 43427390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtattgtgtgtagattgttttttttcctcatcaatttaatacattttagaataacataacaaaacaaaatgtggaaaaagtcaaggggtctgaatacgttcccgaatgcactgtatatctgtgGAGATTTGCCCTGAGAGAGTTCTATGAGCATGCACTCTTTCTACAATGTTAGGTAATGTGACTGCTTCCTGGAAACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694969 lncRNA upstream 1191 43425703 ~ 43425994 (+) True G610455
TU694960 lncRNA upstream 5189 43421731 ~ 43421996 (+) True G610446
TU694949 lncRNA upstream 17034 43409940 ~ 43410151 (+) True G610435
TU694939 lncRNA upstream 21167 43405698 ~ 43406018 (+) True G610425
TU694936 lncRNA upstream 22886 43404079 ~ 43404299 (+) True G610422
TU694987 lncRNA downstream 23690 43451080 ~ 43451342 (+) True G610471
TU694989 lncRNA downstream 25336 43452726 ~ 43453086 (+) True G610473
TU694990 lncRNA downstream 25780 43453170 ~ 43453474 (+) True G610474
TU694991 lncRNA downstream 26265 43453655 ~ 43453945 (+) True G610475
TU694992 lncRNA downstream 27238 43454628 ~ 43454991 (+) True G610476
XM_021609332.2 mRNA upstream 391974 43027924 ~ 43035211 (+) True LOC110527808
XM_036983275.1 mRNA upstream 435821 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA upstream 435821 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA upstream 435821 42985660 ~ 42991364 (+) True LOC110527804
XM_021609317.2 mRNA upstream 491937 42932983 ~ 42935248 (+) True rbp7b
LOC110527818 mRNA downstream 97297 43524687 ~ 43526668 (+) True LOC110527818
LOC110528952 mRNA downstream 99541 43526931 ~ 43529047 (+) True LOC110528952
XM_036983289.1 mRNA downstream 109607 43536997 ~ 43545817 (+) False mon1bb
XM_036983288.1 mRNA downstream 111193 43538583 ~ 43545817 (+) False mon1bb
XM_036983290.1 mRNA downstream 111264 43538654 ~ 43545817 (+) False mon1bb
TU694950 other upstream 16379 43410391 ~ 43410806 (+) True G610436
TU693833 other upstream 605940 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1596377 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1964016 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2792746 40634181 ~ 40634439 (+) True G606977
TU695128 other downstream 156630 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 401614 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 575234 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 594459 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU698525 other downstream 2851344 46278734 ~ 46279333 (+) True G613664

Expression Profile