RNA id: TU694990


Basic Information

Item Value
RNA id TU694990
length 305
lncRNA type intronic
GC content 0.34
exon number 1
gene id G610474
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43453170 ~ 43453474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATTATGTGCGCTAAAGATGGCGTCGTAGCCTGACAAATATATTAGAAAGCAATTGTCAACCTGATCAGAAACACTATGCACCCCATCATCTCCTAAATGAAATCCCTGGTGTATATCCCATGATATGGGGTATAATCTAAAACTGCAGTTGATTGCCAGCTATCATTATTCATCACGAAGACAAATACTGGCCTATATATAATCATTAAACGACTTTAAAGGTGTAGGTCATTTGATGCAAACATATACTGTAAGTAGGTTATAACTTTTCCATTGTATAAATTACATTATCACAATCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694989 lncRNA upstream 84 43452726 ~ 43453086 (+) True G610473
TU694987 lncRNA upstream 1828 43451080 ~ 43451342 (+) True G610471
TU694971 lncRNA upstream 25780 43427185 ~ 43427390 (+) True G610457
TU694969 lncRNA upstream 27176 43425703 ~ 43425994 (+) True G610455
TU694960 lncRNA upstream 31174 43421731 ~ 43421996 (+) True G610446
TU694991 lncRNA downstream 181 43453655 ~ 43453945 (+) True G610475
TU694992 lncRNA downstream 1154 43454628 ~ 43454991 (+) True G610476
TU694993 lncRNA downstream 1863 43455337 ~ 43455603 (+) True G610477
TU695056 lncRNA downstream 33387 43486861 ~ 43488984 (+) True G610512
TU695062 lncRNA downstream 41538 43495012 ~ 43497725 (+) True G610517
XM_021609332.2 mRNA upstream 417959 43027924 ~ 43035211 (+) True LOC110527808
XM_036983275.1 mRNA upstream 461806 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA upstream 461806 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA upstream 461806 42985660 ~ 42991364 (+) True LOC110527804
XM_021609317.2 mRNA upstream 517922 42932983 ~ 42935248 (+) True rbp7b
LOC110527818 mRNA downstream 71213 43524687 ~ 43526668 (+) True LOC110527818
LOC110528952 mRNA downstream 73457 43526931 ~ 43529047 (+) True LOC110528952
XM_036983289.1 mRNA downstream 83523 43536997 ~ 43545817 (+) False mon1bb
XM_036983288.1 mRNA downstream 85109 43538583 ~ 43545817 (+) False mon1bb
XM_036983290.1 mRNA downstream 85180 43538654 ~ 43545817 (+) False mon1bb
TU694950 other upstream 42364 43410391 ~ 43410806 (+) True G610436
TU693833 other upstream 631925 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1622362 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1990001 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2818731 40634181 ~ 40634439 (+) True G606977
TU695128 other downstream 130546 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 375530 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 549150 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 568375 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU698525 other downstream 2825260 46278734 ~ 46279333 (+) True G613664

Expression Profile