RNA id: TU695128



Basic Information


Item Value
RNA id TU695128
length 402
RNA type TUCP
GC content 0.49
exon number 4
gene id G610563
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43584020 ~ 43584896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAATTGACTCGCTGTTAAGAAAATCCCAGCAATGCAGGTAAAGCAAAAACTCAACCCAGTGCTTAGGCCTACCTTTCCTGTGATGTCATTTACAGCAACATGAACAAAGATGGAGGCCTCCTCCATGCCCTCAAGATAGACATGGCGATAACCTGGCATCATGCTGACGAATGCTATGGTCCTCTGTCCAATGAAGTTTTGTCCTATCGGATCATGGTCCCACACCTGGAAACGCACCAGTGCAATCTGGGTCATGTGGAGGGTGAAGACCAAGCTCTCCTCCCACATGGGATTGAAGCCATTGTCATCCACCACCCTTGTCTGCTGCTTACAGCAATCAATAGGCAGACCGATGATCTCCACCTCTACAAAAGGATCAATaatCTCCCCTCTATCCCCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU695106 lncRNA upstream 23351 43552330 ~ 43560669 (+) True G610545
TU695074 lncRNA upstream 69277 43513765 ~ 43514743 (+) True G610528
TU695062 lncRNA upstream 86295 43495012 ~ 43497725 (+) True G610517
TU695056 lncRNA upstream 95036 43486861 ~ 43488984 (+) True G610512
TU694993 lncRNA upstream 128417 43455337 ~ 43455603 (+) True G610477
TU695132 lncRNA downstream 352 43585248 ~ 43586231 (+) True G610564
TU695217 lncRNA downstream 38700 43623596 ~ 43673775 (+) False G610627
TU695216 lncRNA downstream 86835 43671731 ~ 43673775 (+) True G610627
TU695209 lncRNA downstream 244942 43829838 ~ 43831880 (+) False G610622
TU695210 lncRNA downstream 245964 43830860 ~ 43831880 (+) True G610622
XM_036983292.1 mRNA upstream 1709 43567660 ~ 43582311 (+) False si:dkey-183j2.10
XM_021609349.2 mRNA upstream 1709 43576834 ~ 43582311 (+) True si:dkey-183j2.10
XM_036983289.1 mRNA upstream 38203 43536997 ~ 43545817 (+) False mon1bb
XM_036983288.1 mRNA upstream 38203 43538583 ~ 43545817 (+) False mon1bb
XM_036983290.1 mRNA upstream 38203 43538654 ~ 43545817 (+) False mon1bb
XM_021609357.2 mRNA downstream 379581 43964477 ~ 43966869 (+) False ppcs
XM_021609356.2 mRNA downstream 379614 43964510 ~ 43966869 (+) False ppcs
XM_036983299.1 mRNA downstream 379748 43964644 ~ 43966869 (+) True ppcs
XR_002474165.2 mRNA downstream 417660 44002556 ~ 44028120 (+) False si:dkey-264d12.5
XM_021609372.2 mRNA downstream 417660 44002556 ~ 44035143 (+) False si:dkey-264d12.5
TU694950 other upstream 173214 43410391 ~ 43410806 (+) True G610436
TU693833 other upstream 762775 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1753212 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 2120851 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2949581 40634181 ~ 40634439 (+) True G606977
TU695211 other downstream 244108 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 417728 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 436953 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU698525 other downstream 2693838 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 3047226 46632122 ~ 46637954 (+) True LOC110528958

Expression Profile