RNA id: TU695209


Basic Information

Item Value
RNA id TU695209
length 1229
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G610622
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43829004 ~ 43831880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGCCTCTGAGAAATCCACAATGTCAATAAACTGGATAAGTGgcagtgtccccccccccccccccccacacacacattttcaatgTCATCTTCCCCTATCCCTTCCCAGGGAACTAACTGTCAGAGGTATACGGCTGCATTGTTCTAGTTATCCTCTGATAAGCAACATAAGGAAAACATGCCGGAGAGAAAACAGACATCTCAACTTTGAGATCAAGGGGACAACGGTTGTCAGCCCACACATAAGGTGCAAGCCTACCCATACGCACGTTTGAATGcatatgcatatacacacacacacacacacacacttgggacACGCCGTTTCTGACAAGCCATTTCTACAGTTGAAAACAGTTCCGTTTCATCTTGGCTTCCCGACGAAAATAAAAATCTGCCAATGAAGAGATGTTCCAAAATGTATTCTCAACGGAGCATTGTGTGAAATCAAATATACATATTCATTTGCAAATCATGTGTATTAATCAAAGTAGGCGCAGGACTTAACATGGAGACAAGCAGACAAGGGACAGGTCTCTAGTTCAGCTGGATTCAGCACATGCATTAAGAGACGGAGATGTCGGAGGATTCATCAACCACCAAACAATGGAAAAAACGGAGCGAAAAGAAACACCAGACCAGTTTTGTGAACGGATATAAATGATTGCCATTTGCAATATCAGCTTTTAACCGTTACGGAACCCCAATATCAATGTTACGAGTCAAGTTAtgacacacaatatatatatatatattatatttattcaTTGTCATTAATAGTCTGTTTAATCCTTTCTTTTTTTGTGTTTAAAATCTGCACCCTGTCCCAGGCTCATTTCAcagagagtgatgtagagagaggCGCGCCTCCCTCTGTTCAGCCAACACAGCATGTGATGTGAAGGGAGTAGAGAACAGAGTTCATGTTGTCCTGTAATGGCGCCAGCACACCTCCAGATCCtccggtctgtctctgtgtctgtctctgtctgtctgtgtctgtctgtctgtctgtctgtctgtgtctgtctgtctgtgtctgtctgtctgtgtctgtctgtctgtgtctgtctgtctgtgtctgtctgtctgtgtctgtctgtctgtgtctgtctgtctgtgtctgtctgtctgtctgatcctTGGGAAGGCCAGAGTTTCTCCTCAGAGGCGAGCCAGCACAGCGACATCCTCCTAGCCGGGGACTTGTTAATCCACAGAATCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695217 lncRNA upstream 156063 43623596 ~ 43673775 (+) False G610627
TU695216 lncRNA upstream 156063 43671731 ~ 43673775 (+) True G610627
TU695132 lncRNA upstream 243607 43585248 ~ 43586231 (+) True G610564
TU695106 lncRNA upstream 269169 43552330 ~ 43560669 (+) True G610545
TU695074 lncRNA upstream 315095 43513765 ~ 43514743 (+) True G610528
TU695367 lncRNA downstream 35322 43867202 ~ 43872623 (+) True G610764
TU695491 lncRNA downstream 227227 44059107 ~ 44064534 (+) True G610879
TU695493 lncRNA downstream 228488 44060368 ~ 44066058 (+) True G610881
TU695502 lncRNA downstream 237762 44069642 ~ 44071873 (+) False G610889
TU695503 lncRNA downstream 237762 44069642 ~ 44071873 (+) False G610889
XM_036983292.1 mRNA upstream 247527 43567660 ~ 43582311 (+) False si:dkey-183j2.10
XM_021609349.2 mRNA upstream 247527 43576834 ~ 43582311 (+) True si:dkey-183j2.10
XM_036983288.1 mRNA upstream 284021 43538583 ~ 43545817 (+) False mon1bb
XM_021609357.2 mRNA downstream 132597 43964477 ~ 43966869 (+) False ppcs
XM_021609356.2 mRNA downstream 132630 43964510 ~ 43966869 (+) False ppcs
XM_036983299.1 mRNA downstream 132764 43964644 ~ 43966869 (+) True ppcs
XR_002474165.2 mRNA downstream 170676 44002556 ~ 44028120 (+) False si:dkey-264d12.5
XM_021609372.2 mRNA downstream 170676 44002556 ~ 44035143 (+) False si:dkey-264d12.5
TU695128 other upstream 244942 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 419032 43410391 ~ 43410806 (+) True G610436
TU693833 other upstream 1008593 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1999030 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 2366669 41462824 ~ 41463169 (+) True G607904
TU695454 other downstream 170744 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 189969 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU698525 other downstream 2446854 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2800242 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 4007508 47839388 ~ 47839722 (+) True G615624

Expression Profile