RNA id: TU695503


Basic Information

Item Value
RNA id TU695503
length 2069
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G610889
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44069642 ~ 44071873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCATTCTTACACAAAGTCAATTCACTCTAAGTCTTGACTGCGTGTAATGTGGACATGGTACCACAATGCATGACAAATGAAACAATGATTTTTGTAATAATAGCTAGACCTATATAATCATTTACTATAGAAAAGGGATTAACAGTTAATATAGTTTATTTACAGTATATTCCATGCTATGAAATAAAATGCATAAAACACTGGGTACAGAGAGGCATCAATATGGggcaaataaaatgtaatacaATGATACAAGTTAAGGCTTAAATGTGTATAAAATTAACAAAATGTTAATCATTCATATTTAGACATGAGAGCAAAATGATTACAAGACACAAGGAGGTCTTTTTGTACATAAAGATATCTATACATATTTCATGGGACACCCAAAACAGGAATTTACTCATTTTCAATTTAAACATTAAAGGGCATAAAATAACCTGCAGGACATAGATGCAGAATATATGTACAAATAATCACTCAATAGAAAAGGAGACAGTGAGGAGGCAGCACATGTTGTTCTTCCGCAAAGAGCTTCACAGGTGTTAACCAATGAAAGGCCAGGAGGTATCACATGTTGTAATGTGCTCTGACATTTTCTACCAGACAGCACACCATATCCATCACTGGCAAACACGGGGAAAATATACAAATTAAGAAGGATTACATTCATTTGGTTTCAAACCTGTGGATTCTCGTATTTGTACTTTCTATTCCTATTTCATAGGTAAGATAAAAGGAAATATGAGGAGACCCCTTCCTCATCAACGTCGGCAAACAAATCTTTGTAGCACACAGGCAGAGCTCATGCATGTAATTGACCACATCATGACACATGGTAGAGGGTTCAATCGAGTCACATTGAAATGTTACATATAATGGAATGTGTGTTAAGATATTTCATACATTTCGATTTTAAATGAGTTGTCTGCCTCCATTAAAATCTGGTTGAAAATCTGTCAGGTACTGTAATGGCTTGAACCAACAAATATGTCAGTTCCATTATGGACAATTCTTTGTGCTACATTTCTTCAATACGTCACCAAAATATTTTTACTCTTACATGCTGAGTTTCTACAAATACCAACATCagattcaaaatatattttggtgcTTTTCAGGATTGCCTTAAGCAGTGTCCTTTTTAATACCATGGACAATAATATTAACAAGATGAAAACTACAAGAATAAAACATAGGTATTGGCCCTCCATTTTGAAAGCCTTTTGTGTGCATTGTTGTCTAAAAGACATACTTAAGCGTTATAAAGCTTACATGAGAACAATTCCTTTTTAAGTAACGAAAGTGATGCAAACATTGACATTAGGCGtggcaaaaaaaaaatgcttGGATACATGATTTAGTTGACCTAAACAAAAGGAAGGTAAAGTTCCCAATGTAAATATACTTTAGCAAAGCGTAAAGAGAGAAAAGGACAATATAGAAAAACATAGTAGGAGTGGTCATTTAATGCATTATAACACCTATGGTTAACTTTTTAGCTGCCTGGAGCAATGCCTTTTATTGTCTTAGTAGACTAAAAACCTTTTTGGCCAATACTATGAGGCCTGAAAGTGCTGTAAAATCATCTTTGGATGTCCCAAACATTACCCAATCACACCATATAGATGACAGAAAAAAAAGTCTACCTCTTGATAAGGTACAAATACAGTTTGACCCATTTTTGAAACCCACATGGGgtatacaaacaaacaaataaaagcCAATATCTGGGATTGATTACGCTTAAGTGGAGGGGTGTGACCTTACAGGGAGTTCCTCTATGGGTGTCAGGGGTAGGGTGTCAGGGTAGGGTGTCAGGGGTAGGGTGTCAGGGGTAGGGTGTCAGGGGTAGGGTGTCAGGGTAGGGTGTCAGGGATAGGGTGTCAGGGGTAGGGTGTCAGGGGTAGGGTGTCAGGGCAGGGTGTCAGGATAGGGTGTTAGGGCGAAGTGCTCAGATGAGGGAGATCCGTATGGGGATACTGGGAGACTCCGTCCTTTGTGGAGAGTGATGGCTCACCAGGTGTTCCACCACCGTGTGTTTGGACATGTGCTTCATAAGGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695493 lncRNA upstream 3584 44060368 ~ 44066058 (+) True G610881
TU695491 lncRNA upstream 5108 44059107 ~ 44064534 (+) True G610879
TU695367 lncRNA upstream 197019 43867202 ~ 43872623 (+) True G610764
TU695209 lncRNA upstream 237762 43829838 ~ 43831880 (+) False G610622
TU695521 lncRNA downstream 7455 44079328 ~ 44080120 (+) True G610902
TU695508 lncRNA downstream 26338 44098211 ~ 44102475 (+) True G610893
TU695510 lncRNA downstream 92375 44164248 ~ 44177923 (+) True LOC110527839
TU695583 lncRNA downstream 109588 44181461 ~ 44183205 (+) True G610955
TU695587 lncRNA downstream 113602 44185475 ~ 44185968 (+) False G610958
XM_021609368.2 mRNA upstream 34499 44002557 ~ 44035143 (+) False si:dkey-264d12.5
XM_021609369.2 mRNA upstream 34499 44002557 ~ 44035143 (+) False si:dkey-264d12.5
XM_021609370.2 mRNA upstream 34499 44002557 ~ 44035143 (+) False si:dkey-264d12.5
XM_021609371.2 mRNA upstream 34499 44002557 ~ 44035143 (+) False si:dkey-264d12.5
XM_021609373.2 mRNA upstream 34993 44002557 ~ 44034649 (+) False si:dkey-264d12.5
XM_021609378.2 mRNA downstream 13992 44085865 ~ 44092535 (+) False LOC110527834
XM_036983308.1 mRNA downstream 13992 44085865 ~ 44092535 (+) True LOC110527834
XR_002474166.2 mRNA downstream 92383 44164256 ~ 44178065 (+) False LOC110527839
XM_021609387.2 mRNA downstream 143661 44215534 ~ 44261277 (+) False mmel1
XM_021609394.2 mRNA downstream 205047 44276920 ~ 44290296 (+) False slc45a1
TU695458 other upstream 41414 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 62735 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 237762 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 484746 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 658836 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 2206861 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2560249 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3767515 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4754954 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 5500447 49572320 ~ 49620168 (+) False tafa4b

Expression Profile