RNA id: TU695508


Basic Information

Item Value
RNA id TU695508
length 4084
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G610893
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44098211 ~ 44102475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTTTAATTGTACATTAAAACATTTCTCAGGAACCACGGGCAACAAGCACACCAGGTGTGGGTTCGCACAATGATGGTTGCACAGCCACCAACATCCCGACACAATCATTAAAAGTGGTATTATAAATCACCACCACCAATACCAGttacccaccaccaccccacaatAATCATCTTTCTACTTCTTATCCATATCACCGGACAACAGTCTTGCTTTTATTAGACCCCACAGGGATCTGCATCATACTGCACATAGTCATCAGAACACACCAACAACGCATCCAACAAAGCAGGGCACTGCCCCAGTTCTTTAAAGTGGACAACACAgacaagacacacacagacacaaggaTGCAAGAGCAGGGATATAGGGGGATCTTTTATCACTGCACCTCACAGACAAGAGGccagaacatacagtgccttcagaaaagtattcacaccccttgactttttaccaaATGTTACAGCGCCtgaatttaaaaatgtattaaattgagacgattttgtgtcactggcctacccaCAATATCAAAGTGAAATTATGTTGAGACATTTCTCCAAATTAATTACaactgaaaagctgaaatgtctagagtcaataagtattaaactgctttgttatggtaagcctaaataagttcaggaatagAAAttggcttaacaagtcacatagtcactgtgtgcaatagtagtgttttttttaatgactacctcatctctgtaacccacacattcaattatctgtaaggtccctcagtcgagcagtgaatttcagacAGTTTCAcccataaagaccagggaggttttccaatgcctcgcaaagaataGCTCGCACCCATtgttagatgggtaaaaaaaaaaaagacattgaatatccctttaagcatggtaaagttattaattcactttggatggtgtatcaaaacacccagtcactacaaagatacaggcatccttcctaacgcCGCTGCCGGAGAGGAAAACAATTACAGAGTGTAATGgccgtgataggagaaaactgaggatggagaAACAACAATTACTTCACAATACTGACATAATTGACTGAGTGAAAAGAGGGAAGTctgtaaataataaaaaatattcaaaaactagcttcctgtttgcaacaaggcactaaagtaatactgcaaaaaatgtggtaaaGCAATACAATTTTTGCAATGAATACAGGCTGTATCATATCCGGTCGTGATTTGGTCGTCCAGGGTAGGCCGTAATTTTAAATAGGTGGTGGCTGcctcatgttatggatatgcttgtaatcgttaaggactgaggaggttttcaggataaaaaaatgaatggaatggagccaagtacaggcaaaatccttgaggaaaacctgtctCAATCTGCTTTCCACCCGACACTGGGCGATTACTTCACttttcagcagggcaataacttaaaacacaaggccaaatggagttgcttaccaagaagacagtgaatgtgccgagttacagttttgacttaaatctacttgaaaatctatgtcaagacctgaaaatgattgtctagcaatgatcaacaaccaatttgacagagcttgaatactttttaaaatgggaaaatgttgcacaatctagGGGTGGAAAGCTCTTATGGACTTACCTAAAAAGGTCGCAGCCAAATGTGcttctacatacagttgaagtcagaagtttacatacacttagttgactgcctttaaaacagataggaaaattccagaaaatgatgtcatggctttagaagcttctgaccaCTCaggcatcataccgctcaggaaggagacgcattctgtctcctagagatgaacttactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgaaggtgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctatacctgaaaggccactcagcaaggaaaaagtcactgctccaaaactgccataaaaagccagactatggtttgcaactgcacatggggacaaagatcgtactttttggataaatgtcctctggtctgatgaaacaaaaatataactgtttggccataatgaccactgttatgtttggaggaaaaagggggaggcttgcaagccgaagaacaccatcccgaccgtgaagcacgggggcatcagcatcatgttgtgggggtgctttgctgtaggtaggactggtgcaattcacaaaatagatggcatcatgaggcagggaaattacatggatatattgaagcaacatctcaagacatcagtcacgaagttaaagcttggtcgcaaatggacattgaccccaagcatacttccaaagttgtggcaaaatagcttaaggataacaaagtcaaggtattggagtggccatcacaaagtcctgacctcaatcctatagaacatttgtgggcagaactgaaaaagcatgtgcgagcaaggagatcTACTAACctagttataccagctctgtcaggaggaataggccaaaattcacccaacttattgtgggaagcttgtggaaggctacctgaaacgtttgacccaagttaaacaatttaaaggcaatgctaacaaatactaattgagtgaagtaaacttctgacccactgggaatgtgaataaataaaagcagaaataaataattctctaatattattctgacatttcacattcttaaaataaagtggtgatcctaactgacataagacagggactttttactaggattgaatgtcaggaattgtgaaaaactgagtttaaaggtatttggctaaggtgtatgtaaacttccgacttcaactgtagttgacTCAGGTGTAAATATTTACGTAAATGagatctgtatttcattttcattaaatttgcaaacatttctaaaaacatgttttcactttgtcattatggagtattgtgtgtagatcgtgAGGGAAAACTTCAAACTTAAATTTTTTAAAATTCAGactaacacaaaatgtggaatatgtcaatgggcatgaatactttctgaagaaacTGCATATATCCCAGCAACATGAGCACACACTAACATACAGACAGCCCGCCCCCTGGCTCTAGGCTCTCTCAATGCTGGACTTGGCTAAGGGACAAGAGCTCTCATCTTAAACCAGGAAATAACAAGAGCTCTTGGTGCATATGGGGCAGAGAAGCCAACACATACCTGAGCCTCAGAGAATATAtattggtgtgttatgtttacACTGCAACAGCCTTATGGAACTAAATGTAACATTGCCAACAAGATGCCAACAGCCCAGGCCAAGGCAGTATAATAATGTAGTGTAATATCGCTTTCTTTGGCCATTTTCATATCCTTAATGTTattaaactacactgaacaaaaatatatgaaattgttgcatttggTGAACAAGTGAACAAAGAGACAGAATGATTAAAGACCTTCCAGAGCTCATTAATTCCAGTGTCATGCTGCTCGAGTTGTCAGTGGTCTCTGCCCCATAGGCTAACTGTAATTCAGCAGATGTCAAGATTCATTTATTCTGATTAACCTCCTCTCACACCTATGATGTCGACGtcgagggagggaggaggcagggagatGGAATCCACAGGTTTGTGTGTCAATGACGTTTGATCTAAGTTTCAATGGAGGTTTCAGAAAACAGCATGGCTCTTCTACTGCAGCAACAAAAGTTGTTAATGATATTATTGATGCCACAGGGCGAGAAACGGCACAGTCTCCCTTTTCATCGAGCTGTCAGAAAGGCATTCGACGCCGTTGATCATGACGCGTTGCAAAGACTTGGATAGGATCATCTGATCGGGCAGTCTCATGATTCAAAGGTTAACTATCAGATAGAACTCAGTGTGTTCAGTTTGATGTTGTGTCATCAATTGTCCTAACTAAGCTGTCAGCTGAAGTTGATTTTAAATGACAAGACAAACGTTATGGTTATCACCTCTTCCACGTATAGTCAGAGTAGCAACTTACAAGTACTTGGGTTTCTAGATAGATGAGTGTCTCACTTTCAAAACCCCACATCGAATGTCTTTGAGGTCAGGAAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695521 lncRNA upstream 18091 44079328 ~ 44080120 (+) True G610902
TU695502 lncRNA upstream 26338 44069642 ~ 44071873 (+) False G610889
TU695503 lncRNA upstream 26338 44069642 ~ 44071873 (+) False G610889
TU695504 lncRNA upstream 26338 44069642 ~ 44071873 (+) True G610889
TU695493 lncRNA upstream 32153 44060368 ~ 44066058 (+) True G610881
TU695510 lncRNA downstream 61773 44164248 ~ 44177923 (+) True LOC110527839
TU695583 lncRNA downstream 78986 44181461 ~ 44183205 (+) True G610955
TU695587 lncRNA downstream 83000 44185475 ~ 44185968 (+) False G610958
TU695586 lncRNA downstream 83128 44185603 ~ 44186111 (+) False G610958
TU695588 lncRNA downstream 83128 44185603 ~ 44186204 (+) True G610958
XM_021609378.2 mRNA upstream 5676 44085865 ~ 44092535 (+) False LOC110527834
XM_036983308.1 mRNA upstream 5676 44085865 ~ 44092535 (+) True LOC110527834
XM_021609368.2 mRNA upstream 63068 44002557 ~ 44035143 (+) False si:dkey-264d12.5
XM_021609369.2 mRNA upstream 63068 44002557 ~ 44035143 (+) False si:dkey-264d12.5
XM_021609370.2 mRNA upstream 63068 44002557 ~ 44035143 (+) False si:dkey-264d12.5
XR_002474166.2 mRNA downstream 61781 44164256 ~ 44178065 (+) False LOC110527839
XM_021609387.2 mRNA downstream 113059 44215534 ~ 44261277 (+) False mmel1
XM_021609394.2 mRNA downstream 174445 44276920 ~ 44290296 (+) False slc45a1
XM_036983319.1 mRNA downstream 174526 44277001 ~ 44290296 (+) False slc45a1
XM_036983316.1 mRNA downstream 174580 44277055 ~ 44290296 (+) False slc45a1
TU695458 other upstream 69983 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 91304 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 266331 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 513315 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 687405 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 2176259 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2529647 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3736913 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4724352 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 5469845 49572320 ~ 49620168 (+) False tafa4b

Expression Profile