RNA id: TU696199



Basic Information


Item Value
RNA id TU696199
length 276
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G611499
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44223451 ~ 44223726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCTCAAAGCCGAAGTGTAGAGGACTATCAGTCCAGCTAGGGCACAGCTGACCAGCAACAACAGCACAGATAGCACGATTTCCACAACAGTCCAACGGCGCTTCACTGGTTTGGTTGATTTTTCCATGATATCCATTTGGCTTTCGGATTTTCCCATTCTCACCTCTCCGGGCTCTCTGGGAAATGAGCGTGCAGAGTGAAGGGGACAGGGTACAGGCAGAGAGCCTGCGTACCCGTTTGTGAGTGGGCTGTGTCAAGTGATGCAGTGCAATGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU696189 lncRNA downstream 17785 44205461 ~ 44205666 (-) True G611489
TU696186 lncRNA downstream 22606 44200548 ~ 44200845 (-) True G611486
TU696170 lncRNA downstream 31922 44188845 ~ 44191529 (-) True G611470
TU696169 lncRNA downstream 44714 44136185 ~ 44178737 (-) True LOC110527840
TU696122 lncRNA downstream 188607 44034496 ~ 44034844 (-) True G611423
TU696202 lncRNA upstream 3719 44227445 ~ 44227686 (-) True G611502
TU696208 lncRNA upstream 11491 44235217 ~ 44235521 (-) True G611508
TU696290 lncRNA upstream 121651 44345377 ~ 44373823 (-) True G611580
TU696303 lncRNA upstream 126985 44350711 ~ 44351469 (-) True G611591
TU696343 lncRNA upstream 179442 44403168 ~ 44406788 (-) True G611629
XM_036983312.1 mRNA downstream 39247 44178431 ~ 44184204 (-) False LOC110527840
XM_021609386.2 mRNA downstream 39257 44178431 ~ 44184194 (-) False LOC110527840
XM_021609381.2 mRNA downstream 47360 44163371 ~ 44176091 (-) False si:dkeyp-61b2.1
XM_021609388.2 mRNA upstream 37902 44261628 ~ 44269305 (-) True prxl2b
XM_021609397.2 mRNA upstream 67537 44291263 ~ 44294096 (-) True si:ch211-222l21.1
XM_021609398.2 mRNA upstream 91777 44315503 ~ 44320470 (-) True LOC110527846
XM_021609418.2 mRNA upstream 362584 44586310 ~ 44590398 (-) False ghrh
XM_021609419.2 mRNA upstream 362584 44586310 ~ 44590398 (-) True ghrh
TU695139 other downstream 643487 43579093 ~ 43579964 (-) True G610570
TU695151 other downstream 686486 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 261129 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 261129 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 1651239 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 3044597 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4263321 48487047 ~ 48529168 (-) True G616880

Expression Profile