RNA id: TU695717


Basic Information

Item Value
RNA id TU695717
length 236
lncRNA type intronic
GC content 0.29
exon number 1
gene id G611076
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44429831 ~ 44430066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catacattgccaaagcaggaGAAATAGattataaacaaaagtgaaataaaaaatataaaacaattaacagtaaacattacactcacaaaagttccaaaggaatagagacatttccaatgtcatattatgtatatatacagtgttgtaacgatgggcatatagtacaaaagggaaaataaataaacataaatatgggttgtatttacaatggtgtttgttcttcactggttgcccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695683 lncRNA upstream 80695 44348826 ~ 44349136 (+) True G611043
TU695649 lncRNA upstream 116801 44291276 ~ 44313030 (+) True G611014
TU695648 lncRNA upstream 135861 44291276 ~ 44293970 (+) False G611014
TU695507 lncRNA upstream 168684 44258894 ~ 44261147 (+) True mmel1
TU695623 lncRNA upstream 188616 44240976 ~ 44241215 (+) True G610992
TU695718 lncRNA downstream 5680 44435746 ~ 44435954 (+) True G611077
TU695719 lncRNA downstream 7012 44437078 ~ 44438380 (+) True G611078
TU695720 lncRNA downstream 9154 44439220 ~ 44439426 (+) True G611079
TU695721 lncRNA downstream 9763 44439829 ~ 44440157 (+) True G611080
TU695722 lncRNA downstream 10810 44440876 ~ 44441442 (+) True G611081
XM_021609396.2 mRNA upstream 139528 44277077 ~ 44290303 (+) True slc45a1
XM_021609395.2 mRNA upstream 139533 44277077 ~ 44290298 (+) False slc45a1
XR_005052583.1 mRNA upstream 139533 44277077 ~ 44290298 (+) False slc45a1
XR_005052584.1 mRNA upstream 139533 44277077 ~ 44290298 (+) False slc45a1
XM_036983318.1 mRNA upstream 139535 44277077 ~ 44290296 (+) False slc45a1
XM_036984483.1 mRNA downstream 20520 44450586 ~ 44464197 (+) True LOC110527112
XM_021609400.2 mRNA downstream 37528 44467594 ~ 44520451 (+) False LOC110527847
XM_021609401.2 mRNA downstream 37528 44467594 ~ 44520451 (+) False LOC110527847
XM_021609402.2 mRNA downstream 55419 44485485 ~ 44520451 (+) False LOC110527847
XM_021609403.2 mRNA downstream 73726 44503792 ~ 44520451 (+) False LOC110527847
TU695458 other upstream 401603 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 422924 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 597951 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 844935 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1019025 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1848668 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2202056 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3409322 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4396761 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 5142254 49572320 ~ 49620168 (+) False tafa4b

Expression Profile