RNA id: TU695749


Basic Information

Item Value
RNA id TU695749
length 200
lncRNA type intronic
GC content 0.47
exon number 1
gene id G611105
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44492809 ~ 44493008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGGTCGCTTTCCCTTCACAGATCAATCTCTTCCTTTCCTCTGCTCCTTTCCCCCTGACCTCAGATCTAAGAATACTCAGCAGTGACAGTCTTTTCTATGTGTACTGTTGATTCTGTTCGCGCCACGCACTCTCTCATCTCGATTGGTGAGATTTTAGCTCTTTGGCACCATCTAGTGACATCTGTCATAGAGTATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695727 lncRNA upstream 7403 44484870 ~ 44485406 (+) True G611083
TU695745 lncRNA upstream 10846 44481684 ~ 44481963 (+) True G611101
TU695743 lncRNA upstream 11707 44480685 ~ 44481102 (+) True G611099
TU695737 lncRNA upstream 18195 44474369 ~ 44474614 (+) True G611093
TU695731 lncRNA upstream 31628 44460857 ~ 44461181 (+) True G611087
TU695752 lncRNA downstream 4819 44497827 ~ 44498369 (+) True G611108
TU695755 lncRNA downstream 9746 44502754 ~ 44502972 (+) True G611111
TU695764 lncRNA downstream 20739 44513747 ~ 44513980 (+) True G611120
TU695768 lncRNA downstream 25752 44518760 ~ 44519012 (+) True G611124
TU695726 lncRNA downstream 27043 44520051 ~ 44521844 (+) False LOC110527847
XM_036984483.1 mRNA upstream 28612 44450586 ~ 44464197 (+) True LOC110527112
XM_036983320.1 mRNA upstream 43575 44321639 ~ 44449234 (+) False LOC110527111
XM_036983321.1 mRNA upstream 43575 44321639 ~ 44449234 (+) False LOC110527111
XM_036983322.1 mRNA upstream 43575 44395837 ~ 44449234 (+) True LOC110527111
XM_021609396.2 mRNA upstream 202506 44277077 ~ 44290303 (+) True slc45a1
XM_021609403.2 mRNA downstream 10784 44503792 ~ 44520451 (+) False LOC110527847
XM_021609404.2 mRNA downstream 10785 44503793 ~ 44520451 (+) False LOC110527847
XM_036984433.1 mRNA downstream 34902 44527910 ~ 44535089 (+) True LOC110528955
XM_021609406.2 mRNA downstream 42216 44535224 ~ 44540487 (+) False LOC110527848
XM_021609407.2 mRNA downstream 42216 44535224 ~ 44540487 (+) True LOC110527848
TU695458 other upstream 464581 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 485902 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 660929 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 907913 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1082003 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1785726 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2139114 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3346380 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4333819 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 5079312 49572320 ~ 49620168 (+) False tafa4b

Expression Profile