RNA id: TU696501


Basic Information

Item Value
RNA id TU696501
length 1333
lncRNA type read_through
GC content 0.36
exon number 2
gene id G611768
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44634346 ~ 44640269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCATTTGATGATTTGTGTATTTATTCAGACTGACTCAATGAGTCACATCATTGAATACCTTAATTTAAGGTAAATATTTCAAGAGAAATACAGTGATTAAACATCACAACAAGAACTTGAACAAATCTCCAAGATATGATACTCTATCAGAGTATAGGATACAAAGTTAATGTCtttataaaatacaaaataattgttTCAAATAAACAAGGGTTTTTCAATTAGACATTTCTTTCTCCCATTTGCAAAAAGCACATTATTCAAATAACATGATCAATAATTTCACAAATGAAGTTCGatctttaaacaaatcaaatattgtTAATCACAGAGTGATGATAGCAGGTATAATACCCAGTTTGGGTAAATAATCCTCACGGAGGAACATTGATGCTGTAGCTCAAGTTGATCAATATCAAATATATAACTGATACATGCTTCACAGAAGATGCTCAATACAATGTCAATATGACTATATCACTACACAAATGTAGTGGTAAAAAATTACTCACATTTTCAGACCATAACAACAGATTCATCAAATACAATCACACACAGATTGATGATATTGCATCCATTTTGGGTTAGAAGTTCACATAGAGAACCATTAGTTATTGTTCATCATGAATATAAACACATGATCAATATAATCTACATGTTTCACAAAACATAAAGGTTATGATGATTTCAATTAACACTACAAAAATGTAGTTTTCATCGATCAGATTATTTTCTTGGAAAAATGTTTTAACTTCAGTTCAACTGAAATGAAATGTCTCAATCACAACAAGACTTTTAAAAACTCCTGCTTAAGCAGAAAACAATGAATATATTTTATTATACTCATTAATGTCCATGAAATTAATCTTAGACCAACATGGTCCATCCATTGTGTTTGTCTGAGTGGAGCTCCAATCTATAGGTCTCTACCAAGGCCTCCAGGGGGCGATGTTGACTGGACTCTTGTCTTTGCTGATGCTGTGCTGGGCTGGGGAGCTCAGCTGAGGACGGTCAATCTTCCTCTTGTTCTCATCAGAGGATGGCTGCAGGCTCTGGAAGTGGCTCAGCAGTCTTCTCTGGGACTGTGACTTCTGCTCACATTTAGAAAGGAAGTGAACAATCTCTTGGACACACCTGGAGTAACCCTGATTGACAGGTGCTGAGCAGGAAGAGGAGCTCACTGGCTGGTTCTGTTTCTGTTGTCTCAGGAAGCAAACTGTCATCTCCAGGATGTCGGCTTTGTCCAGCTTAGAGTCGGACTGCTGGTTGAGGATCTCTGGAACCAGGAGAGACTTGAGTTGCTCAATGCTGTTGTTGATACGATCTCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696499 lncRNA downstream 803 44633782 ~ 44633990 (-) True G611767
TU696481 lncRNA downstream 27445 44606887 ~ 44607348 (-) True LOC110527856
TU696450 lncRNA downstream 58296 44576237 ~ 44576497 (-) True G611730
TU696416 lncRNA downstream 105564 44528931 ~ 44529229 (-) True G611696
TU696414 lncRNA downstream 107512 44527080 ~ 44527281 (-) True G611694
TU696606 lncRNA upstream 17468 44657737 ~ 44658705 (-) True LOC118936679
TU696715 lncRNA upstream 141714 44781983 ~ 44782270 (-) True G611955
TU696730 lncRNA upstream 154193 44794462 ~ 44794673 (-) True G611970
TU696740 lncRNA upstream 159896 44800165 ~ 44800483 (-) True G611980
TU696904 lncRNA upstream 162755 44803024 ~ 44865252 (-) True cntn4
XM_021609424.2 mRNA downstream 5081 44627888 ~ 44629712 (-) True LOC110527858
XM_021609427.2 mRNA downstream 10112 44623094 ~ 44624681 (-) True LOC110527861
LOC110527855 mRNA downstream 21165 44612093 ~ 44613628 (-) True LOC110527855
LOC118965287 mRNA downstream 24461 44608797 ~ 44610332 (-) True LOC118965287
LOC110527856 mRNA downstream 27461 44606061 ~ 44607332 (-) False LOC110527856
XR_005052585.1 mRNA upstream 17190 44657459 ~ 44658756 (-) False LOC118936679
XR_005052586.1 mRNA upstream 17190 44657459 ~ 44658756 (-) False LOC118936679
XM_021609440.2 mRNA upstream 162740 44803009 ~ 44930031 (-) False cntn4
XM_036983332.1 mRNA upstream 162740 44803009 ~ 44930389 (-) False cntn4
XM_036983330.1 mRNA upstream 162740 44803009 ~ 44930511 (-) False cntn4
TU696391 other downstream 149041 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 149388 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 1054829 43579093 ~ 43579964 (-) True G610570
TU695153 other downstream 1097828 43526691 ~ 43536965 (-) False LOC110527816
TU698246 other upstream 1234696 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 2628054 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 3846778 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 4544155 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 4544155 49184424 ~ 49186096 (-) True G617624

Expression Profile