RNA id: TU696736


Basic Information

Item Value
RNA id TU696736
length 231
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G611976
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44797571 ~ 44797801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttacaggtaacttattggatactttgtagtcatgttgggcgagttggaaccggtgtattttctgaatcaaacgcgacaaataaattgacattttggggatgtAAAgcaggaatttatcgaacaaatgcaccatttgtgatgtttctgggacattttggagtgccaacagaagaagatcttcaaaggtaaggcatgaattatatcgttatttctgacttttgtgtaacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696718 lncRNA upstream 14289 44782961 ~ 44783282 (+) True G611958
TU696563 lncRNA upstream 17376 44779650 ~ 44780195 (+) True G611811
TU696550 lncRNA upstream 19482 44775730 ~ 44778089 (+) False LOC110527864
TU696551 lncRNA upstream 19576 44775730 ~ 44777995 (+) True LOC110527864
TU696474 lncRNA upstream 167610 44629750 ~ 44629961 (+) True G611750
TU696738 lncRNA downstream 1403 44799204 ~ 44799519 (+) True G611978
TU696744 lncRNA downstream 5316 44803117 ~ 44865025 (+) True G611983
TU696785 lncRNA downstream 105040 44902841 ~ 44910896 (+) True G612021
TU697070 lncRNA downstream 243675 45041476 ~ 45041741 (+) True G612292
TU697072 lncRNA downstream 244135 45041936 ~ 45042226 (+) True G612294
XM_021609433.2 mRNA upstream 19476 44669788 ~ 44778095 (+) False LOC110527864
XR_005052587.1 mRNA downstream 72393 44870194 ~ 44878900 (+) True LOC118965289
XR_005052588.1 mRNA downstream 557740 45355541 ~ 45387473 (+) False LOC118965290
XR_005052589.1 mRNA downstream 557740 45355541 ~ 45387473 (+) True LOC118965290
XM_036983344.1 mRNA downstream 621347 45419148 ~ 45489247 (+) False cntn3b
XM_021609446.2 mRNA downstream 784032 45581833 ~ 45705499 (+) False pdzrn3b
TU695458 other upstream 769343 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 790664 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 965691 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 1212675 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1386765 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1480933 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 1834321 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3041587 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4029026 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 4774519 49572320 ~ 49620168 (+) False tafa4b

Expression Profile