RNA id: TU696744


Basic Information

Item Value
RNA id TU696744
length 1566
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G611983
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44803117 ~ 44865025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAATCCCAAAGTGTGTAGGCCTACAGGAGAACACCTGTTTGAGACAGAAGCACAGACATAAAAGTGGTTTGACTTGTATGGCTACAGATACACAAACCTGCTATCTCTTTGTATGGTCTCAAGCCATTCAGTCAGTTAGCAAATGGACAGAAAAGAAGGGCAAATACAGTCATGCTGAACGACATTTAGCTACTGTATGAAACatttgtgttattacataaaAACCAGGTTAATCAGCTCTTTAGAAAGGTTTTTATTTGATATAAATGATCTGAAGTGTACAAAAAAGTATATTAGACATTTCTCGATGCATGATTCTGAGTCAGACCCATTAGTCTGCCTAAACTTCCCCTCGAAAGTACTACAAACTACCTGCACTTTTTACTTTTTCACTGGATTACAAGCTACATATGTATgggactgtattgtactgtactgtaccagtaTCACATGGCATCAGAAGACTATGGGAAAGGAAAACTTGTCAGCAGCATTTATCTTTTAGTAGGGGAGCAGTCAGTGGACCTACTAAAATGTCCCAGGCTTTCCACCTTACCTTTAAGCCATGCTGAACAGCACGACACTGTTGAAACACACTTCTCCTTCATAAAGAGCTTTTccaggtcaggtcacatggtcagaaaACCCCCTGGCCCTAACTATAATATACGACAAGGACAAGGAGATTTTCCCGACCACataacctgaccaggaaaaaaactcctggccctaagaATGACTGTAGGATTATACACGGGATGGTAATAACCTGTCTATTAATGCAGAGTGTAGCTACACATCATACAGCAGCTGCATAACAACATACATCTATGTTTATAATAGTTGTTGATAGATAAGTTAAGGCTCTTTAAGGACCTGAGGATTTTGAAGATATGATGAGGCACACACAAGGCAAAGAATAGAATAGCTTTAGAGTTGACACACGGCTAATGTAACTGAGAGGATGATGAGCGGATTAGACAGACAGCCAGCGCAATTAAATGGCCAAGGCCAGAGCAACCTATGGAGGATGGGACTCCAAACCAGCAAGGGACAATAAAGTCCCTCTCATCCTTTAACATAGTTTGTCACATTTCTATCAAGTCTCATTTTTCATCAGGCgatgttttatgctggtcaagggcagtcaagtctgggctgaaccaagggctatatctgttctaagTTCTATATTTTTTGAATGGGCAtccttatttaagatggagaggaaatcacttttaaagagcaaccaggaatcctctactgatgggatgaggtcaatttcctaccaggatacccaggccaggtcaattagaaaggcctgctcgctgaagtgtttcagggagcgtttgacagtgatgaggggtggtcgtttgaccgcagacccattacacacgcaggcaatgaggcaatgatcgctgagatcctggttgaagacagcagaggtgtatttagagggcaagttggtcaggatggttacggatttagggttgtacctggttggttccatgataatttgtgtgagattgagggcatctagcttagattgtaggacggccggggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU696738 lncRNA upstream 3598 44799204 ~ 44799519 (+) True G611978
TU696736 lncRNA upstream 5316 44797571 ~ 44797801 (+) True G611976
TU696718 lncRNA upstream 19835 44782961 ~ 44783282 (+) True G611958
TU696563 lncRNA upstream 22922 44779650 ~ 44780195 (+) True G611811
TU696550 lncRNA upstream 25028 44775730 ~ 44778089 (+) False LOC110527864
TU696785 lncRNA downstream 37816 44902841 ~ 44910896 (+) True G612021
TU697070 lncRNA downstream 176451 45041476 ~ 45041741 (+) True G612292
TU697072 lncRNA downstream 176911 45041936 ~ 45042226 (+) True G612294
TU697081 lncRNA downstream 183423 45048448 ~ 45048686 (+) True G612303
TU697088 lncRNA downstream 191581 45056606 ~ 45056827 (+) True G612310
XM_021609433.2 mRNA upstream 25022 44669788 ~ 44778095 (+) False LOC110527864
XR_005052587.1 mRNA downstream 5169 44870194 ~ 44878900 (+) True LOC118965289
XR_005052588.1 mRNA downstream 490516 45355541 ~ 45387473 (+) False LOC118965290
XR_005052589.1 mRNA downstream 490516 45355541 ~ 45387473 (+) True LOC118965290
XM_036983344.1 mRNA downstream 554123 45419148 ~ 45489247 (+) False cntn3b
XM_021609446.2 mRNA downstream 716808 45581833 ~ 45705499 (+) False pdzrn3b
TU695458 other upstream 774889 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 796210 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 971237 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 1218221 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1392311 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1413709 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 1767097 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 2974363 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 3961802 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 4707295 49572320 ~ 49620168 (+) False tafa4b

Expression Profile