RNA id: TU697081


Basic Information

Item Value
RNA id TU697081
length 239
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G612303
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45048448 ~ 45048686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAAACATTTGTACTATGGGGGGTAGTAGATTTAGATAGGCTAGTGGTTTTGCTGTTCgctaggcctactcatcttgttggctgataacaaaagtaaatgtggacagttcatccaatatcttcaatatgcaccttggaattggataaggacacgcgcagttgcgtccctgatgtgtctgtcttcacttgtagcctgtgagaaagccCTATcatggagagtgagtgagagacactTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU697072 lncRNA upstream 6222 45041936 ~ 45042226 (+) True G612294
TU697070 lncRNA upstream 6707 45041476 ~ 45041741 (+) True G612292
TU696785 lncRNA upstream 137552 44902841 ~ 44910896 (+) True G612021
TU696744 lncRNA upstream 183423 44803117 ~ 44865025 (+) True G611983
TU696738 lncRNA upstream 248929 44799204 ~ 44799519 (+) True G611978
TU697088 lncRNA downstream 7920 45056606 ~ 45056827 (+) True G612310
TU697116 lncRNA downstream 31455 45080141 ~ 45080428 (+) True G612337
TU697255 lncRNA downstream 130588 45179274 ~ 45179957 (+) True G612472
TU697262 lncRNA downstream 135226 45183912 ~ 45184116 (+) True G612479
TU697276 lncRNA downstream 143113 45191799 ~ 45191999 (+) True G612493
XR_005052587.1 mRNA upstream 169548 44870194 ~ 44878900 (+) True LOC118965289
XM_021609435.2 mRNA upstream 270353 44669794 ~ 44778095 (+) False LOC110527864
XR_005052588.1 mRNA downstream 306855 45355541 ~ 45387473 (+) False LOC118965290
XR_005052589.1 mRNA downstream 306855 45355541 ~ 45387473 (+) True LOC118965290
XM_036983344.1 mRNA downstream 370462 45419148 ~ 45489247 (+) False cntn3b
XM_021609446.2 mRNA downstream 533147 45581833 ~ 45705499 (+) False pdzrn3b
XM_036983345.1 mRNA downstream 533972 45582658 ~ 45705499 (+) False pdzrn3b
TU695458 other upstream 1020220 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 1041541 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 1216568 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 1463552 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1637642 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1230048 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 1583436 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 2790702 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 3778141 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 4523634 49572320 ~ 49620168 (+) False tafa4b

Expression Profile