RNA id: TU697317


Basic Information

Item Value
RNA id TU697317
length 275
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G612531
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45233490 ~ 45233764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacataagcattcagaccctttgctatgatactcaaaattgagctcaggtacatcccatctccattgatcatccttgagatgtatctacaacttgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaagcacacacctgtctatataaggtcccaaagttgacaacGCATTTCAGAGCATTGAccaggccatgaggtcgaaggaattgtccgtagagctccgagacatgattaTGTCTAGGTACAGATCTGCAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU697307 lncRNA upstream 69 45232999 ~ 45233421 (+) True G612521
TU697297 lncRNA upstream 26296 45206593 ~ 45207194 (+) True G612511
TU697276 lncRNA upstream 41491 45191799 ~ 45191999 (+) True G612493
TU697262 lncRNA upstream 49374 45183912 ~ 45184116 (+) True G612479
TU697255 lncRNA upstream 53533 45179274 ~ 45179957 (+) True G612472
TU697283 lncRNA downstream 15166 45248930 ~ 45252529 (+) True G612498
TU697323 lncRNA downstream 28374 45262138 ~ 45268758 (+) True G612537
TU697445 lncRNA downstream 94193 45327957 ~ 45328350 (+) True G612647
TU697461 lncRNA downstream 106631 45340395 ~ 45340652 (+) True G612663
TU697475 lncRNA downstream 115928 45349692 ~ 45349898 (+) True G612677
XR_005052587.1 mRNA upstream 354590 44870194 ~ 44878900 (+) True LOC118965289
XM_021609435.2 mRNA upstream 455395 44669794 ~ 44778095 (+) False LOC110527864
XR_005052588.1 mRNA downstream 121777 45355541 ~ 45387473 (+) False LOC118965290
XR_005052589.1 mRNA downstream 121777 45355541 ~ 45387473 (+) True LOC118965290
XM_036983344.1 mRNA downstream 185384 45419148 ~ 45489247 (+) False cntn3b
XM_021609446.2 mRNA downstream 348069 45581833 ~ 45705499 (+) False pdzrn3b
XM_036983345.1 mRNA downstream 348894 45582658 ~ 45705499 (+) False pdzrn3b
TU695458 other upstream 1205262 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 1226583 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 1401610 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 1648594 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1822684 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 1044970 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 1398358 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 2605624 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 3593063 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 4338556 49572320 ~ 49620168 (+) False tafa4b

Expression Profile