RNA id: TU697542


Basic Information

Item Value
RNA id TU697542
length 344
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G612741
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45394950 ~ 45395293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatcacgcttcaccatctgtcagttcgatggacaaatctgggtttggcggatgccaggagaacgctacttgccccaatgcatagtaccaactgtaacgtttggtggtgAAGGAAGaacaatggtctggggctgtttttcatggttcgtgctaggccccttagttccagcgaaaggaaatcttaacgctacagcatacaatgacattctagacgattctgtaatTCCAATTTccaagcgaggtccatacagaaatggtttctcGAGATTGGTGTGGTagaacttgacaggcctgcacagagccctggcctcaaccccattgaacacctttgggatgaattgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU697478 lncRNA upstream 43697 45350953 ~ 45351253 (+) True G612680
TU697475 lncRNA upstream 45052 45349692 ~ 45349898 (+) True G612677
TU697461 lncRNA upstream 54298 45340395 ~ 45340652 (+) True G612663
TU697445 lncRNA upstream 66600 45327957 ~ 45328350 (+) True G612647
TU697323 lncRNA upstream 126192 45262138 ~ 45268758 (+) True G612537
TU697561 lncRNA downstream 90571 45485864 ~ 45489104 (+) True cntn3b
TU697798 lncRNA downstream 307658 45702951 ~ 45705462 (+) True pdzrn3b
TU697903 lncRNA downstream 339064 45734357 ~ 45735901 (+) True G613087
TU697930 lncRNA downstream 368167 45763460 ~ 45804022 (+) True G613108
TU697978 lncRNA downstream 444806 45840099 ~ 45840622 (+) True G613155
XR_005052588.1 mRNA upstream 7477 45355541 ~ 45387473 (+) False LOC118965290
XR_005052589.1 mRNA upstream 7477 45355541 ~ 45387473 (+) True LOC118965290
XR_005052587.1 mRNA upstream 516050 44870194 ~ 44878900 (+) True LOC118965289
XM_021609435.2 mRNA upstream 616855 44669794 ~ 44778095 (+) False LOC110527864
XM_036983344.1 mRNA downstream 23855 45419148 ~ 45489247 (+) False cntn3b
XM_021609446.2 mRNA downstream 186540 45581833 ~ 45705499 (+) False pdzrn3b
XM_036983345.1 mRNA downstream 187365 45582658 ~ 45705499 (+) False pdzrn3b
XM_021609448.2 mRNA downstream 262900 45658193 ~ 45705499 (+) False pdzrn3b
XM_021609447.2 mRNA downstream 283653 45678946 ~ 45705499 (+) False pdzrn3b
TU695458 other upstream 1366722 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 1388043 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 1563070 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 1810054 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 1984144 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 883441 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 1236829 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 2444095 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 3431534 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 4177027 49572320 ~ 49620168 (+) False tafa4b

Expression Profile