RNA id: TU698359


Basic Information

Item Value
RNA id TU698359
length 233
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G613509
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 45986050 ~ 45986282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttatcggtggtgactctGTTTCCTATTAtcggtgcagtgggcagctgggaggagatgctcttattctccatggattttacagtgtcccaaaactttttggaattagtgctacaggaagcacatttctgtttgctagccttagctttcctatcTGACTGAGTATAtttgttcctgacttccctgaaaatgtgcatattgttgtggctattcaatgctaatgcagtaagccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698344 lncRNA upstream 11830 45973886 ~ 45974220 (+) True G613494
TU697979 lncRNA upstream 102664 45875605 ~ 45883386 (+) True LOC110527873
TU697978 lncRNA upstream 145428 45840099 ~ 45840622 (+) True G613155
TU697930 lncRNA upstream 182028 45763460 ~ 45804022 (+) True G613108
TU697903 lncRNA upstream 250149 45734357 ~ 45735901 (+) True G613087
TU698360 lncRNA downstream 439 45986721 ~ 45987081 (+) True G613510
TU698371 lncRNA downstream 6203 45992485 ~ 45997072 (+) True LOC110527875
TU698452 lncRNA downstream 143493 46129775 ~ 46134266 (+) True G613591
TU698473 lncRNA downstream 225531 46211813 ~ 46212217 (+) True G613612
TU698508 lncRNA downstream 267805 46254087 ~ 46254298 (+) True G613647
XM_021608273.2 mRNA upstream 18881 45964395 ~ 45967169 (+) True prok2
XM_021609456.2 mRNA upstream 102649 45843163 ~ 45883401 (+) False LOC110527873
XM_021609454.2 mRNA upstream 176431 45768698 ~ 45809619 (+) True shq1
XM_021609448.2 mRNA upstream 280551 45658193 ~ 45705499 (+) False pdzrn3b
XR_002474170.2 mRNA downstream 6005 45992287 ~ 45997119 (+) False LOC110527875
XM_036983352.1 mRNA downstream 11505 45997787 ~ 46209553 (+) False foxp1b
XM_036983347.1 mRNA downstream 11507 45997789 ~ 46209553 (+) False foxp1b
XM_036983348.1 mRNA downstream 11507 45997789 ~ 46209553 (+) False foxp1b
XM_036983353.1 mRNA downstream 11508 45997790 ~ 46209553 (+) False foxp1b
TU695458 other upstream 1957822 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 1979143 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2154170 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2401154 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 2575244 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 292452 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 645840 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 1853106 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2840545 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3586038 49572320 ~ 49620168 (+) False tafa4b

Expression Profile