RNA id: TU698473


Basic Information

Item Value
RNA id TU698473
length 405
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G613612
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46211813 ~ 46212217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatctttccatgacaaactgaccaggtgaatccagctgaaagctatgctgcattattgatgtcacctgttcaatcagtgtagatgaaggggaggagacaggttaaagaaggacttttaagaaggacaattgagacatggattgtgtatgtgtgccattcagagcgtgaatgggcaagacaaaagatttaagtggctttgaacggggtatgttgCCGGGCGCATCAGTTtgggtgtgtcaagaactgcaacgctgctgggtttttcacactcaacagtttcccgtgtttatcaagactggttcaccacccaaaggacatccagccaacttgacacaactattgGAAGCACTGGAGTCGacatggggccagcatccctgtggaatgcgttcgacaccttgtagtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698452 lncRNA upstream 77547 46129775 ~ 46134266 (+) True G613591
TU698371 lncRNA upstream 214741 45992485 ~ 45997072 (+) True LOC110527875
TU698360 lncRNA upstream 224732 45986721 ~ 45987081 (+) True G613510
TU698359 lncRNA upstream 225531 45986050 ~ 45986282 (+) True G613509
TU698344 lncRNA upstream 237593 45973886 ~ 45974220 (+) True G613494
TU698508 lncRNA downstream 41870 46254087 ~ 46254298 (+) True G613647
TU698524 lncRNA downstream 65997 46278214 ~ 46278421 (+) True G613663
TU698527 lncRNA downstream 70280 46282497 ~ 46286328 (+) False G613666
TU698529 lncRNA downstream 70280 46282497 ~ 46286328 (+) False G613666
TU698530 lncRNA downstream 70280 46282497 ~ 46286328 (+) True G613666
XM_036983352.1 mRNA upstream 2260 45997787 ~ 46209553 (+) False foxp1b
XM_036983347.1 mRNA upstream 2260 45997789 ~ 46209553 (+) False foxp1b
XM_036983348.1 mRNA upstream 2260 45997789 ~ 46209553 (+) False foxp1b
XM_036983353.1 mRNA upstream 2260 45997790 ~ 46209553 (+) False foxp1b
XM_036983351.1 mRNA upstream 2260 45997792 ~ 46209553 (+) False foxp1b
XM_021609459.2 mRNA downstream 126596 46338813 ~ 46341970 (+) True LOC110527877
XM_036983367.1 mRNA downstream 176741 46388958 ~ 46451934 (+) False LOC110527879
XM_021609464.2 mRNA downstream 199641 46411858 ~ 46450572 (+) False LOC110527879
XM_021609466.2 mRNA downstream 199643 46411860 ~ 46450600 (+) False LOC110527879
XM_036983366.1 mRNA downstream 199643 46411860 ~ 46451934 (+) False LOC110527879
TU695458 other upstream 2183585 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2204906 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2379933 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2626917 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 2801007 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 66517 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 419905 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 1627171 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2614610 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3360103 49572320 ~ 49620168 (+) False tafa4b

Expression Profile