RNA id: TU698524



Basic Information


Item Value
RNA id TU698524
length 208
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G613663
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46278214 ~ 46278421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacacttaatccttgtaacaattccctgtctcaccactttattttaagaaagtgaaatgtcagaataatagtagaaggatttatttcagctttatttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttaattttggTCAAATGTTTTTGGGAAGCCgttcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU698508 lncRNA upstream 23916 46254087 ~ 46254298 (+) True G613647
TU698473 lncRNA upstream 65997 46211813 ~ 46212217 (+) True G613612
TU698452 lncRNA upstream 143948 46129775 ~ 46134266 (+) True G613591
TU698371 lncRNA upstream 281142 45992485 ~ 45997072 (+) True LOC110527875
TU698360 lncRNA upstream 291133 45986721 ~ 45987081 (+) True G613510
TU698527 lncRNA downstream 4076 46282497 ~ 46286328 (+) False G613666
TU698529 lncRNA downstream 4076 46282497 ~ 46286328 (+) False G613666
TU698530 lncRNA downstream 4076 46282497 ~ 46286328 (+) True G613666
TU698860 lncRNA downstream 76521 46354942 ~ 46355408 (+) True G613982
TU698884 lncRNA downstream 92351 46370772 ~ 46370994 (+) True G614004
XM_036983349.1 mRNA upstream 68661 46084769 ~ 46209553 (+) False foxp1b
XM_021609459.2 mRNA downstream 60392 46338813 ~ 46341970 (+) True LOC110527877
XM_036983367.1 mRNA downstream 110537 46388958 ~ 46451934 (+) False LOC110527879
XM_021609464.2 mRNA downstream 133437 46411858 ~ 46450572 (+) False LOC110527879
XM_021609466.2 mRNA downstream 133439 46411860 ~ 46450600 (+) False LOC110527879
XM_036983366.1 mRNA downstream 133439 46411860 ~ 46451934 (+) False LOC110527879
TU695458 other upstream 2249986 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2271307 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2446334 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2693318 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 2867408 43410391 ~ 43410806 (+) True G610436
TU698525 other downstream 313 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 353701 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 1560967 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2548406 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3293899 49572320 ~ 49620168 (+) False tafa4b

Expression Profile