RNA id: TU698529


Basic Information

Item Value
RNA id TU698529
length 426
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G613666
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46282497 ~ 46286328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatgaggacccaaaagcgaattaatgtaaacagagcttctttaataaccaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttgcagcaaacatgacgatagtctggttcaggcatgactaacacaaacaagaatccgacaaagacaggagcagaaagagagagagatatagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagtcagagaagacaagggacagctgggggaaagagggggagaaaaggtaacctaacacgaccagcagagggagacagggtgaagagaaaggacagaaacaagacacaacatgacagtacatgacactcacagacaatatttttacagttttggaaactttagagtgttttctatcataatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698524 lncRNA upstream 4076 46278214 ~ 46278421 (+) True G613663
TU698508 lncRNA upstream 28199 46254087 ~ 46254298 (+) True G613647
TU698473 lncRNA upstream 70280 46211813 ~ 46212217 (+) True G613612
TU698452 lncRNA upstream 148231 46129775 ~ 46134266 (+) True G613591
TU698371 lncRNA upstream 285425 45992485 ~ 45997072 (+) True LOC110527875
TU698860 lncRNA downstream 68614 46354942 ~ 46355408 (+) True G613982
TU698884 lncRNA downstream 84444 46370772 ~ 46370994 (+) True G614004
TU698943 lncRNA downstream 135986 46422314 ~ 46422603 (+) True G614063
TU698947 lncRNA downstream 142230 46428558 ~ 46428855 (+) True G614067
TU698954 lncRNA downstream 154188 46440516 ~ 46440807 (+) True G614074
XM_036983349.1 mRNA upstream 72944 46084769 ~ 46209553 (+) False foxp1b
XM_021609459.2 mRNA downstream 52485 46338813 ~ 46341970 (+) True LOC110527877
XM_036983367.1 mRNA downstream 102630 46388958 ~ 46451934 (+) False LOC110527879
XM_021609464.2 mRNA downstream 125530 46411858 ~ 46450572 (+) False LOC110527879
XM_021609466.2 mRNA downstream 125532 46411860 ~ 46450600 (+) False LOC110527879
XM_036983366.1 mRNA downstream 125532 46411860 ~ 46451934 (+) False LOC110527879
TU698525 other upstream 3164 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 2254269 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2275590 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2450617 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2697601 43584020 ~ 43584896 (+) True G610563
TU699203 other downstream 345794 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 1553060 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2540499 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3285992 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 3300542 49586870 ~ 49620168 (+) True tafa4b