RNA id: TU698947



Basic Information


Item Value
RNA id TU698947
length 298
lncRNA type intronic
GC content 0.50
exon number 1
gene id G614067
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46428558 ~ 46428855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtactggcctgtctcctggtagcgcctccatgctctggacactacgctgacagacacagcaaaccttcttgccacagctcgcattgatgtgccatcctggatgagctgcactacctgagccacttgtgtggtttgtagactccgtctcatgctaccactagagtgaaagcactgccagcattcaaaagtgaccaaaacatcagctaggaagcataggaactgagaagtggtctgtgatcaccacctgcagaaccactcctttattgggggtgtcttgctaattgcctataatttccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU698943 lncRNA upstream 5955 46422314 ~ 46422603 (+) True G614063
TU698884 lncRNA upstream 57564 46370772 ~ 46370994 (+) True G614004
TU698860 lncRNA upstream 73150 46354942 ~ 46355408 (+) True G613982
TU698527 lncRNA upstream 142230 46282497 ~ 46286328 (+) False G613666
TU698954 lncRNA downstream 11661 46440516 ~ 46440807 (+) True G614074
TU698955 lncRNA downstream 12836 46441691 ~ 46441916 (+) True G614075
TU698918 lncRNA downstream 41182 46470037 ~ 46470483 (+) True G614038
TU698963 lncRNA downstream 42067 46470922 ~ 46471113 (+) True G614083
TU699119 lncRNA downstream 94980 46523835 ~ 46524124 (+) True G614237
XM_021609459.2 mRNA upstream 86588 46338813 ~ 46341970 (+) True LOC110527877
XM_036983350.1 mRNA upstream 219005 46111482 ~ 46209553 (+) False foxp1b
LOC110527880 mRNA downstream 32855 46461710 ~ 46468087 (+) True LOC110527880
XM_036984486.1 mRNA downstream 49489 46478344 ~ 46479954 (+) True LOC110527881
XM_021609468.2 mRNA downstream 154910 46583765 ~ 46596389 (+) True LOC110527882
LOC110528958 mRNA downstream 200736 46629591 ~ 46638492 (+) False LOC110528958
XR_005052732.1 mRNA downstream 205359 46634214 ~ 46634266 (+) True LOC118965406
TU698525 other upstream 149225 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 2400330 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 2421651 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695211 other upstream 2596678 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 2843662 43584020 ~ 43584896 (+) True G610563
TU699203 other downstream 203267 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 1410533 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 2397972 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 3143465 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 3158015 49586870 ~ 49620168 (+) True tafa4b

Expression Profile