RNA id: TU700127


Basic Information

Item Value
RNA id TU700127
length 623
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G615178
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47210856 ~ 47211478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaatattcagacccattgctgTGAagctcaaaattgagctcaggtgcatcctgtttccattgatcatccttgagctgtttatatgatttggaaaggcatacgtctgtctatataaggtaccacaggtcactctgacagagctccattcCTCTGCGGAGatgaagaaccttccagaaggacattaATTtctccagcactccaccaatctggcctttatggtagagcagCCAGACGTAAGcacgacagcctgcttggagtttgccaaaaaggcacctaaaggactctcagaccatgagaaacaagattctctggtctgatgaaactctttggcctgaatgccaagtgtcacgtctggaggaaatctggtaCCATTcccatggtgaagcatggtgttggcagcatcatgctgtggtaatgtttttcagcggcagggactgggagagtagtcaggatcaagggaaagatgaacagagcaaagtacagagagatccttgatgaaaaccttctccagagtgctcagaacctcagactggggtgaaggttgaccttccaacaggacaacgaccctaagcacacagccaagacaacacaggagtctctgaatgtccttgagtggaccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700114 lncRNA downstream 7215 47203422 ~ 47203641 (-) True G615165
TU700026 lncRNA downstream 115920 47093998 ~ 47094936 (-) True G615078
TU699998 lncRNA downstream 148926 47061540 ~ 47061930 (-) True G615050
TU699956 lncRNA downstream 185792 47024405 ~ 47025064 (-) True G615034
TU699871 lncRNA downstream 291176 46919416 ~ 46919680 (-) True G614951
TU700135 lncRNA upstream 3688 47215166 ~ 47215444 (-) True G615186
TU700200 lncRNA upstream 14321 47225799 ~ 47226727 (-) True G615251
TU700203 lncRNA upstream 17703 47229181 ~ 47229467 (-) True G615254
TU700205 lncRNA upstream 19470 47230948 ~ 47231154 (-) True G615256
TU701090 lncRNA upstream 214374 47425852 ~ 47496066 (-) True G616058
XM_021611125.1 mRNA downstream 64842 47144905 ~ 47146014 (-) True LOC110528959
XM_021609477.2 mRNA downstream 69296 47045318 ~ 47141560 (-) True LOC110527887
XM_021609476.2 mRNA downstream 69327 47045318 ~ 47141529 (-) False LOC110527887
NM_001165143.1 mRNA downstream 750532 46457015 ~ 46460324 (-) True praf3
XM_036983363.1 mRNA downstream 835894 46341988 ~ 46374962 (-) True LOC110527878
XM_021609478.2 mRNA upstream 48847 47260325 ~ 47282372 (-) False LOC110527888
XM_036983370.1 mRNA upstream 49215 47260693 ~ 47284791 (-) False LOC110527888
LOC110527117 mRNA upstream 78012 47289490 ~ 47294719 (-) True LOC110527117
XM_021609481.2 mRNA upstream 91212 47302690 ~ 47337079 (-) True LOC110527890
XM_021609484.2 mRNA upstream 125757 47337235 ~ 47345245 (-) False LOC110527893
TU698246 other downstream 1335156 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 2725104 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 2725451 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 3630892 43579093 ~ 43579964 (-) True G610570
TU695154 other downstream 3673891 43526691 ~ 43536965 (-) True LOC110527816
TU700211 other upstream 56845 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 1275569 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1972946 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1972946 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1984126 49195604 ~ 49195970 (-) True G617632

Expression Profile