RNA id: TU701090


Basic Information

Item Value
RNA id TU701090
length 270
lncRNA type read_through
GC content 0.47
exon number 2
gene id G616058
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47425852 ~ 47496066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttcttccagttttcctctgttttgcctactcctggcagcctgaaaggagatgatacagcctctcagataagccttcagtgtttcccacaataatgctggggaggtctctgtgttgtcgttggtatcaaagaaaaatgtaatttggtctttaagatattcacagaatgttggttctgtgaggagctgaggattcaacctccagaccctctcgtttggtacaatgtcacccaatctcagggagaaggtgagtggacAGTGGCAGGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700205 lncRNA downstream 194698 47230948 ~ 47231154 (-) True G615256
TU700203 lncRNA downstream 196385 47229181 ~ 47229467 (-) True G615254
TU700200 lncRNA downstream 199125 47225799 ~ 47226727 (-) True G615251
TU700135 lncRNA downstream 210408 47215166 ~ 47215444 (-) True G615186
TU700127 lncRNA downstream 214374 47210856 ~ 47211478 (-) True G615178
TU701146 lncRNA upstream 44843 47540909 ~ 47541186 (-) True G616112
TU701196 lncRNA upstream 151477 47647543 ~ 47749086 (-) True G616162
TU701394 lncRNA upstream 512730 48008796 ~ 48009224 (-) True G616328
TU701424 lncRNA upstream 550850 48046916 ~ 48047153 (-) True G616358
TU701430 lncRNA upstream 556871 48052937 ~ 48053207 (-) True G616364
XM_021609492.2 mRNA downstream 9701 47404911 ~ 47416151 (-) False LOC110527896
XM_021609493.2 mRNA downstream 9701 47404911 ~ 47416151 (-) False LOC110527896
XM_021609495.2 mRNA downstream 9701 47404911 ~ 47416151 (-) False LOC110527896
XM_036983376.1 mRNA downstream 9701 47404911 ~ 47416151 (-) True LOC110527896
XM_021609494.2 mRNA downstream 15693 47404911 ~ 47410159 (-) False LOC110527896
XR_005052591.1 mRNA upstream 16868 47512934 ~ 47516740 (-) True LOC118965292
XM_036983383.1 mRNA upstream 48527 47544593 ~ 47548608 (-) True LOC110527901
XM_021609503.2 mRNA upstream 52891 47548957 ~ 47555818 (-) True LOC110527902
XM_021609507.2 mRNA upstream 63502 47559568 ~ 47563955 (-) False si:dkeyp-97e7.9
XM_021609508.2 mRNA upstream 63502 47559568 ~ 47563955 (-) False si:dkeyp-97e7.9
TU700211 other downstream 155781 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 1550152 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 2940100 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 2940447 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 3845888 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 990981 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 1688358 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 1688358 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1699538 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1799189 49295255 ~ 49297248 (-) True mustn1b

Expression Profile