RNA id: TU700659


Basic Information

Item Value
RNA id TU700659
length 1811
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G615652
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 47881622 ~ 47883457 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACAGAGGGTATGTTCACATAATACACAACACAAACAATGAGTGGTTGAATCAGTACTATTTTCAAAGGCAAGCTTGCAGGAGGGAAATTATGAGTAGTTACAAAATCAAAAAGGTTCATCTTTATCATGGATCATTTGAAAATACAGCCAGAGTTACTGTTACTATTTACAAGCATTATTTACACAGGAAAGCTTCCAGGGAGTGTCTTATCTACATCGTCAGTTTACTATATCATAGTTTGGATGCATGTGAAATTCAGACCTTCAGTTACCGAGGGAAGCAGAGAGCAGTTATCACTACACCCGTTTTAACAGAACACCTGAGCCAAAATATCTATGGTGAAAAGAAGTGATAGTGTTACTACTTTACACATGTGTTTATGCCTCTTTCAATATTGGTgtattgcaacaaaaaaaacattatttttggcAACGCACTAGATAAATGCAGTGAAacgtgttttacagggtcagccatagtagtacggcaaccctggagcaaattaggattaagtgccttgctcaagggcacgtcaacagatttttcacctagtcagctcaggcatTCCAAGCAGCGACctttccggttactggcccaacgctctaactgctaggctacctgctgccgaATAGATCTCccatacacacagtacatacatgtACCAGAATACATTTATAACATCCTCCATCAGCAGTTGAAAATCAGAGGGTTGTTATTGCACAACACACACTGTTGAGGAGACCACTAAAACGGGCATTTTACACAAGCTCCAAAACACATGGTCTTATTGCTTCCAGTTTGTACTTTGAAATGTACGCTCTGACTGTGGCTCTACTGTAGTCAGACTATAGACGGTGGCTCTATATCAAAATGGCTGTGgaataacttttttttatttttagataaAATCACCAACATAGCAGTGAGACTGATGCAGTCTTGTTGATAGAACTACTAAAAACATCACAGGCACGCTCATTTTTAAATTAGAACTGGAGGCTGAGTCTCTAGAactcaaacacacagacacacatacatacaagaGGCCAAATAGATATAAGGAGGGGACCCTGGGTCTGTTTCCTGATGACAATGTCCATCCTGTACAAACCATATGAGACTCCTCCTGCACAGCCCATATCCAGCAAAGAAACAATGGCACGTCACATTCAGTTATAAATGTAGGAGGAAAATCTGATTTTACATGCAGTTAAAACAAAGTCATCCAAATGAACTGGATAAAAAGCGGTCCCTATGATGTAAAGTCATTTGTAGTCTTTTTGTGTGCAATAATTGTGGGGTTTCCATCACATATCACACACAATGTCACCTATGCAGTAGGCACAGATGTATTGTTCTGCAGTCAGAAAGTAGAACAGAGGATGGGTCCACTGTCAAGTGACGGTGTTACGTACAGTACTCAGTGGTGAAACATCTGGATTCTCTTATCTTCTTATGACCCTGCCTTTGAAGACATAACTGATCAACTCTGGTATTGTTACAGTAtgatttccagtgtgtgtgtgtgttttgtgataGGTCAATGGAGTGGGGCGGGCTTCGCAGAGCGAATCTCTCAGTGACACTGGGGCACGTGGTGTCAAGGGAGTCAGTCTACACAACGCCCTCAATGAAACTGGTGTCCAGGTGAACAATGAGCATGCGCAGGAAAGACATCTCCTTGCGTGTGTTCTCAAAGATGATTCGTGGGTCATCAGACTGGCAGCGGAGGCAGTTGGGGGCCATCACCATGGCAAGGTTATTGACATCCATCTTAGTAACAGACACATTAGCAGGCTGAGCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700570 lncRNA upstream 117604 47763315 ~ 47764018 (+) True G615580
TU700288 lncRNA upstream 239096 47641241 ~ 47642526 (+) True G615338
TU700419 lncRNA upstream 304582 47574138 ~ 47577040 (+) True G615453
TU700291 lncRNA upstream 336718 47544600 ~ 47544904 (+) True G615340
TU700408 lncRNA upstream 339135 47542232 ~ 47542487 (+) True G615444
TU700761 lncRNA downstream 126413 48009870 ~ 48010082 (+) True G615748
TU700785 lncRNA downstream 162171 48045628 ~ 48045973 (+) True G615770
TU700786 lncRNA downstream 162584 48046041 ~ 48046339 (+) True G615771
TU700789 lncRNA downstream 166296 48049753 ~ 48049968 (+) True G615774
TU700799 lncRNA downstream 174685 48058142 ~ 48058351 (+) True G615784
LOC110527911 mRNA upstream 107404 47755267 ~ 47774218 (+) True LOC110527911
XM_021609516.2 mRNA upstream 166333 47711530 ~ 47715289 (+) True LOC110527910
XM_021609504.2 mRNA upstream 241774 47621471 ~ 47639848 (+) True si:ch211-232b12.5
XM_021609510.2 mRNA upstream 315463 47564064 ~ 47566159 (+) True LOC110527907
XM_021609501.2 mRNA upstream 346334 47529385 ~ 47535288 (+) True LOC110527900
XR_005052708.1 mRNA downstream 138032 48021489 ~ 48022175 (+) False LOC118965382
XR_005052709.1 mRNA downstream 138032 48021489 ~ 48022175 (+) True LOC118965382
XM_021609534.2 mRNA downstream 183466 48066923 ~ 48068196 (+) True LOC110527919
XM_036983394.1 mRNA downstream 244503 48127960 ~ 48168204 (+) False LOC110527921
XM_036983395.1 mRNA downstream 244503 48127960 ~ 48168204 (+) False LOC110527921
TU700614 other upstream 41900 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 1243668 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 1602289 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 3853394 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 3874715 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU702226 other downstream 943370 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 1688863 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 1703413 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 2419973 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 3077037 50960494 ~ 51074007 (+) True LOC110527970

Expression Profile