RNA id: TU701513


Basic Information

Item Value
RNA id TU701513
length 204
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G616440
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48186039 ~ 48186242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgcttcccctgtgaacgcgcatagtgaatgcatggtcaactcgtggcagtggtgactatttcctgtgtcattcgaccccccttcacattagaatcatcagacaaagttctattgactgttgacatctagtggaaggcgtaggaattgaaaactcatccatatctcgctgtaatttcaatgagagcttggttgaagatctgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701472 lncRNA downstream 54575 48131101 ~ 48131464 (-) True G616402
TU701438 lncRNA downstream 127407 48058427 ~ 48058632 (-) True G616370
TU701430 lncRNA downstream 132832 48052937 ~ 48053207 (-) True G616364
TU701424 lncRNA downstream 138886 48046916 ~ 48047153 (-) True G616358
TU701394 lncRNA downstream 176815 48008796 ~ 48009224 (-) True G616328
TU701515 lncRNA upstream 647 48186889 ~ 48187220 (-) True G616442
TU701520 lncRNA upstream 19417 48205659 ~ 48206004 (-) True G616446
TU701525 lncRNA upstream 20010 48206252 ~ 48206540 (-) True G616447
TU701494 lncRNA upstream 28699 48214941 ~ 48216060 (-) True LOC110527922
TU701623 lncRNA upstream 203647 48389889 ~ 48390160 (-) True G616543
XM_021609537.2 mRNA downstream 67954 48074448 ~ 48118085 (-) True LOC110527920
XM_021609539.2 mRNA downstream 67961 48074448 ~ 48118078 (-) False LOC110527920
XM_021609535.2 mRNA downstream 67962 48074448 ~ 48118077 (-) False LOC110527920
XM_021609540.2 mRNA downstream 67962 48074448 ~ 48118077 (-) False LOC110527920
XM_021609538.2 mRNA downstream 86420 48074448 ~ 48099619 (-) False LOC110527920
XM_036983410.1 mRNA upstream 28685 48214927 ~ 48241830 (-) False LOC110527922
XM_036983412.1 mRNA upstream 28685 48214927 ~ 48241830 (-) False LOC110527922
XM_036983404.1 mRNA upstream 28685 48214927 ~ 48241833 (-) False LOC110527922
XM_021609549.2 mRNA upstream 28685 48214927 ~ 48241834 (-) False LOC110527922
XM_036983403.1 mRNA upstream 28685 48214927 ~ 48242126 (-) False LOC110527922
TU700211 other downstream 915968 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 2310339 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 3700287 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 3700634 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 4606075 43579093 ~ 43579964 (-) True G610570
TU701964 other upstream 300805 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 998182 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 998182 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 1009362 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 1109013 49295255 ~ 49297248 (-) True mustn1b

Expression Profile