RNA id: TU701613


Basic Information

Item Value
RNA id TU701613
length 237
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G616533
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48381122 ~ 48381358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattagtattggatagaaaacactcagaagtttctaaaactgtttgaatgatgtctgtgagtataactcatatggcaggcaaaaacctgagaagaaatccaaacaggaagtgagaaatcgatTTTCAAAACAGTGCCTATTGAAATCCCAGTGAGATACGAATGAggatgcacttcctagggcttccactagatgtcaccgtctttagaaactggtttgaggattccaCAATAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU700895 lncRNA upstream 160746 48219727 ~ 48220376 (+) True G615875
TU700886 lncRNA upstream 184011 48196782 ~ 48197111 (+) True LOC110510677
TU700874 lncRNA upstream 197827 48183096 ~ 48183295 (+) True G615855
TU700867 lncRNA upstream 203552 48177368 ~ 48177570 (+) True G615848
TU700862 lncRNA upstream 210738 48170170 ~ 48170384 (+) True G615843
TU701625 lncRNA downstream 9539 48390897 ~ 48391124 (+) True G616545
TU701630 lncRNA downstream 14133 48395491 ~ 48395723 (+) True G616550
TU701640 lncRNA downstream 18883 48400241 ~ 48400505 (+) True G616560
TU701659 lncRNA downstream 27951 48409309 ~ 48409526 (+) True G616579
TU701683 lncRNA downstream 42905 48424263 ~ 48424727 (+) True G616603
XM_021609552.2 mRNA upstream 98945 48277681 ~ 48282177 (+) True LOC110527924
XM_036983416.1 mRNA upstream 166576 48196783 ~ 48214546 (+) False LOC110510677
XM_036983415.1 mRNA upstream 166576 48197822 ~ 48214546 (+) False LOC110510677
XM_036983414.1 mRNA upstream 166576 48209538 ~ 48214546 (+) False LOC110510677
XM_036983413.1 mRNA upstream 166576 48209539 ~ 48214546 (+) False LOC110510677
XM_021609553.2 mRNA downstream 89329 48470687 ~ 48714043 (+) False LOC110527925
XM_036983417.1 mRNA downstream 89329 48470687 ~ 48714043 (+) False LOC110527925
XM_036983419.1 mRNA downstream 89329 48470687 ~ 48714043 (+) False LOC110527925
XM_036983418.1 mRNA downstream 89330 48470688 ~ 48712407 (+) False LOC110527925
XM_021609554.2 mRNA downstream 89330 48470688 ~ 48714043 (+) True LOC110527925
TU700614 other upstream 541400 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 1743168 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 2101789 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 4352894 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 4374215 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU702226 other downstream 445469 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 1190962 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 1205512 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 1922072 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 2579136 50960494 ~ 51074007 (+) True LOC110527970

Expression Profile