RNA id: TU701683


Basic Information

Item Value
RNA id TU701683
length 465
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G616603
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48424263 ~ 48424727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaaacccatgccacaccctggcctgaccaaataaatgaaaataaacacaaaatacttcgaccagggcgtgacagaataagagaggaccaagtacagagtcttggggcacaccattaaagacagacaatttaacagacatacgtccatcaaattgagtgcactgagttctatcagacagatagttagcaaaccatgcaactgcatgctctgaaagaccaacactcgacaatctctgccttagtatagcatgatcaactgtatcaaaagccttagagagatcaataaaaagtgagacacagtgctgttttttgtcaagggcttcagtgatatcatttaaaatcttcatggctgctgtaattgtgctatgcttcttcctgaagcccaattggtacattgataaaatagagttagtaaataaaaactattttagctgttcactcacaagggtttcaaatattttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701659 lncRNA upstream 14737 48409309 ~ 48409526 (+) True G616579
TU701640 lncRNA upstream 23758 48400241 ~ 48400505 (+) True G616560
TU701630 lncRNA upstream 28540 48395491 ~ 48395723 (+) True G616550
TU701625 lncRNA upstream 33139 48390897 ~ 48391124 (+) True G616545
TU701613 lncRNA upstream 42905 48381122 ~ 48381358 (+) True G616533
TU701687 lncRNA downstream 2137 48426864 ~ 48427068 (+) True G616607
TU701723 lncRNA downstream 39978 48464705 ~ 48464938 (+) True G616643
TU701740 lncRNA downstream 44223 48468950 ~ 48469354 (+) True G616660
TU701801 lncRNA downstream 115186 48539913 ~ 48587831 (+) True G616719
TU701917 lncRNA downstream 289745 48714472 ~ 48714693 (+) True G616834
XM_021609552.2 mRNA upstream 142086 48277681 ~ 48282177 (+) True LOC110527924
XM_036983416.1 mRNA upstream 209717 48196783 ~ 48214546 (+) False LOC110510677
XM_021609553.2 mRNA downstream 45960 48470687 ~ 48714043 (+) False LOC110527925
XM_036983417.1 mRNA downstream 45960 48470687 ~ 48714043 (+) False LOC110527925
XM_036983419.1 mRNA downstream 45960 48470687 ~ 48714043 (+) False LOC110527925
XM_036983418.1 mRNA downstream 45961 48470688 ~ 48712407 (+) False LOC110527925
XM_021609554.2 mRNA downstream 45961 48470688 ~ 48714043 (+) True LOC110527925
TU700614 other upstream 584541 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 1786309 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 2144930 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 4396035 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 4417356 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU702226 other downstream 402100 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 1147593 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 1162143 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 1878703 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 2535767 50960494 ~ 51074007 (+) True LOC110527970

Expression Profile