RNA id: TU701917


Basic Information

Item Value
RNA id TU701917
length 222
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G616834
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48714472 ~ 48714693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatatatatatattattttttaaacctgttttAGACCCAGGTCCACTCAGACccaaccctggagagagagagcgagaaattgAATAAGGATTTCCTTCCATTCATACGGTGAAGCACAGCAACCATACTAACAAGAAGATTCCATCACCTGTGAATGGCATTGCTTTTGCACAAGTAACTATTAAAAAGTAATAATTGTCTTCAGATGATGATGCAAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU701801 lncRNA upstream 126641 48539913 ~ 48587831 (+) True G616719
TU701740 lncRNA upstream 245118 48468950 ~ 48469354 (+) True G616660
TU701723 lncRNA upstream 249534 48464705 ~ 48464938 (+) True G616643
TU701687 lncRNA upstream 287404 48426864 ~ 48427068 (+) True G616607
TU701683 lncRNA upstream 289745 48424263 ~ 48424727 (+) True G616603
TU702212 lncRNA downstream 96665 48811358 ~ 48811629 (+) True G617119
TU702215 lncRNA downstream 98326 48813019 ~ 48813288 (+) True G617122
TU702219 lncRNA downstream 103359 48818052 ~ 48818306 (+) True G617126
TU702222 lncRNA downstream 107006 48821699 ~ 48821995 (+) True G617129
TU702223 lncRNA downstream 109358 48824051 ~ 48824312 (+) True G617130
XM_021609553.2 mRNA upstream 429 48470687 ~ 48714043 (+) False LOC110527925
XM_036983417.1 mRNA upstream 429 48470687 ~ 48714043 (+) False LOC110527925
XM_036983419.1 mRNA upstream 429 48470687 ~ 48714043 (+) False LOC110527925
XM_021609554.2 mRNA upstream 429 48470688 ~ 48714043 (+) True LOC110527925
XM_036983418.1 mRNA upstream 2065 48470688 ~ 48712407 (+) False LOC110527925
XM_021609555.2 mRNA downstream 22578 48737271 ~ 48740708 (+) False lsm14b
XM_021609556.2 mRNA downstream 22578 48737271 ~ 48740708 (+) True lsm14b
XM_021609565.2 mRNA downstream 120501 48835194 ~ 48845739 (+) False LOC110527931
XM_021609564.2 mRNA downstream 120502 48835195 ~ 48845739 (+) True LOC110527931
XM_036983423.1 mRNA downstream 147132 48861825 ~ 48874455 (+) False LOC110527932
TU700614 other upstream 874750 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 2076518 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 2435139 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 4686244 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU695454 other upstream 4707565 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU702226 other downstream 112134 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 857627 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 872177 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 1588737 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 2245801 50960494 ~ 51074007 (+) True LOC110527970

Expression Profile