RNA id: TU702803


Basic Information

Item Value
RNA id TU702803
length 1673
RNA type TUCP
GC content 0.45
exon number 1
gene id G617624
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49184424 ~ 49186096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattgtgaaaaGCAACTTACTTTATATGAACATGTATTCCAATGTGAAACATGTATTTCGAGATGTAACACTGATTAAGTTTGGTGAAAAAGGGACTGTGATTTTGTGTGTTGTacttagtcaattgaaaatgtgctttGAGTTTTTAAACAACTGCCTTGTTTTGTACTAAgtgttgtgaaaatgtaccacatactgtacttgtgaaaattgcaccaaagcgatagaaaaaaactgtaatatgaaCCGAAAATGTGTATTTCTGTAGGACATGTGTACGCGTTAGTGTGTGACGTGGGAGCCCTGTGCTCACCCTGGGTTTGGAGCCTGCTGTCTGGGTCACACTGGTGCACCCTGGGGCGTGAGCTCCACAAAGAAGCCTTCTATAAACAGCAGCACATCACTCAGGGGAGGAGCTCAACAAAACCATTACTGCACTTTGGGGATCATAGAGTTGGCTTCATTACATCTGATATCACTTAGAAATACAGCAGGAATCAAAACCTCTTCACCAACACTGGAAttcacactgacactccaataGACacagatggcgagagagagacaaagacacgaTACATTTCACATTTAAAGGACTCAGTGACATTATTTAGTATTAAAACTTGATTTCCTTTATTTTGTGAGATGGACAAAATGTTAAAAACATACAGCTTAGGAACAATGTCTCGTCTAAGATAAGTCTGTGTTCTTTTCTTTACATAATAACACTGAAACTATAATCGTAACAATATCCTTGTGTTCTGAAGAAAGCAAAAAGAGTGAAAATaaattatcataacaactagtatAACATCAattataacaacaataataacaattatTAACTTTATATAAACTTTCTGTTTGCTTGCTTCTTTTTTCCAATAAAGTCCAGGGGGACCAGGCGGGTGGTGTGTATTCCAGCATgtgagaggtgaggggtcagtggtgtgtgtgtgtgtatgcatgtgtggggAGGCTGGTTCAGAAAGTCTCTCATACCCACGGTGTCAACAGTCTGTCCACAACAGGAAGGGGGAGGTTGGTCTCATTACACTACAGAGGTACAGGAGGGGAAAGCAGTGGTTCTCCTAATACCTCACATCTTTTCTCTCATAGGGTGGGAGGGGTACCAAAGTGACTCAGTAAAAAAAAAGGCAACTTGAAGGGAGCAACTCAACACGCCCATGTTCCGCTTCACCCTCGCACACTCACGTTCTCTCTCCCTTCAGTCACGTCTCCTCTCCATCAATTCTCTAAATGAGGCCAGGCAAAACAATGTGCTACTGACAGTGAGCCCAATTTACCCCTCTAGAGACAGAAGCATTCGTGGTGATGATATGGTGGAGGGGTGATGGAGGGGCTTCAGGAGGTTTCAGTGCTCAGCCCAAGCCGGCGACCGTCCGGAGTGATGGTGAGGATGGCCGAACGAAGGGTggatgggagtgggagtgggcAGCATGTGTCCGGAGTGGCTGAAGGGGGGAAGGTGGCCCATGTGGGTCATGTGTCCAGCCAGGCCAGGGCCACCGCCGAAGGGGGAGGACTTGTCATGCATGCATTTGGACAGCTCATCGTAGCCATCTCCGGAACGCCTGCCCCTCTTGGACTTGCTGGACATCTTGCGGTTGCGTGTCTGGATGCCCTCCTTCTTCATGGTCATTGGCCTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702799 lncRNA downstream 2853 49180790 ~ 49181571 (-) True G617621
TU702795 lncRNA downstream 6327 49174363 ~ 49178097 (-) True G617618
TU702794 lncRNA downstream 10967 49172440 ~ 49173457 (-) True G617617
TU702784 lncRNA downstream 28494 49155700 ~ 49155930 (-) True G617607
TU702783 lncRNA downstream 30344 49153809 ~ 49154080 (-) True G617606
TU702807 lncRNA upstream 5260 49191356 ~ 49191558 (-) True G617628
TU702820 lncRNA upstream 19476 49205572 ~ 49268133 (-) False G617637
TU702818 lncRNA upstream 78759 49264855 ~ 49268133 (-) True G617637
TU702834 lncRNA upstream 112549 49298645 ~ 49301227 (-) True G617650
TU702920 lncRNA upstream 228030 49414126 ~ 49414400 (-) True G617730
XM_021609589.2 mRNA downstream 40271 49136688 ~ 49144153 (-) True LOC110527948
XM_021609583.2 mRNA downstream 66586 49115044 ~ 49117838 (-) True LOC110527945
XR_002474175.2 mRNA downstream 96229 49083910 ~ 49088195 (-) False LOC110527944
XM_036983427.1 mRNA downstream 179588 48999055 ~ 49004836 (-) True LOC110527937
XM_021609573.2 mRNA downstream 179592 48997764 ~ 49004832 (-) False LOC110527937
XM_021609596.2 mRNA upstream 89085 49275181 ~ 49289804 (-) True LOC110527952
XM_021609600.2 mRNA upstream 108944 49295040 ~ 49297305 (-) False mustn1b
XM_021609597.2 mRNA upstream 117060 49303156 ~ 49317526 (-) False LOC110527953
XM_036983435.1 mRNA upstream 117060 49303156 ~ 49317530 (-) False LOC110527953
XM_036983436.1 mRNA upstream 117060 49303156 ~ 49317531 (-) True LOC110527953
TU701964 other downstream 655256 48487047 ~ 48529168 (-) True G616880
TU700211 other downstream 1914353 47268323 ~ 47270071 (-) True LOC110527888
TU698246 other downstream 3308724 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 4698672 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 4699019 44484855 ~ 44485405 (-) False G611674
TU702811 other upstream 9508 49195604 ~ 49195970 (-) True G617632
TU702832 other upstream 109159 49295255 ~ 49297248 (-) True mustn1b
TU703492 other upstream 473939 49660035 ~ 49936281 (-) False LOC110527961
TU704151 other upstream 1118352 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 1770175 50956271 ~ 50958540 (-) True G619733

Expression Profile