RNA id: TU702454


Basic Information

Item Value
RNA id TU702454
length 7475
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G617345
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49275178 ~ 49284452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCAGGTCTGACCAACGCCCCTACGTCAAGCACACAGGGGCGTTGATTTTTAATCACTctgtatatctttctctctccgtgGCCATTCAACATTGGTTAAATACACACAAGTTAGGTGGAAGTGGGTCCATTTATTTCAACAGGTTTTGCTCATCACTATCTATATCAATATCTATAAATGTCCCCTTTCTTGCCACTTATCTTTTAATTAAATGTACTCCAGTCAGATGTTATCTAACGTTACCCACAATTATTCTCATGTCATGATGGTATATCTTCAGCACATACAGGGTGTTGAATCCATGTGAAATGTGTGACTAATGTACTGTACAGTTTGAGGAGGTTGACTGCTAGTGTACCAGACTCAGACAGTCTTGAAGAGTCCAGACATGATGTAGTCTGTGTGGTTTCCATCGATGAGGCCGTTGCCGTTGCTATGGATGAACCAGCAGGGGATGTTCTCTCCATTCTTCACATCCCAGCGGAAGTCCCTCTGCCAGCCCCTGTGGAAACACAGCAAGGAGGAGAGACGATGATGAgaaaagtgtgtgtatgtactgcatgtgtttgtgtgtgtgtagacatctACCTAGTCACTGTAAGCTCCTGTCCCTTCACTAGCATGGTGGCATCTGGTTTCTCTGGCACCTCTCCTGGACGCATGTCTTTCACCTCAAACTGCACGCCATGGTAAAACTGACCTGCATGGGGACAATACAATACATTTGAATTGATCAACCAAACAGACAATTGTCCAATATAATGCAGAGGCCGTGGACgctgggggagaggaggtggcgATCCTAAGAGGAGGTGGCTGTCCTACCTAGAAGGCCAGGGACTCTGGGGGAGAAGATGTGGCTGTCCTACCTAGAAGGCCGTGGACGCTGGGGGATAAGAGGTGGCTGTCCAGGGTATAGAATCCCAGATAGTCCTGGTGGTAGGGGTGCTGCTTCCACACCTTGTGTAGGATGACCACAAACCGGACCGAGTCCCTGAGGGTGACAGTCAAGCTGCGGTCTTTGGTCACCTGCAGGTccatactgtaggagggagagaggcagagagaggtggttTAACCACGATCACAGAATAAAACGTTAGATGCCCCTTCAACCTTATGTGGTAGGGGGGTTGCATTACAGAGTTATATGGAAGCCAGAACGGCAAAATCAGAATGGGTAAGGGTGCTTACTTGGCTCCCTTGAGAGAGGCGGTGTCTGACCAGAAGAGCTTGGCCTGCTTGCCATCCTGGGACACAGTGATGTCATGAGTGGTCACCTCCAGTCTCACCCCCAGCCCCTGGTGAACGATGCCAAAGCGACCAAAATAGGTGTTCACTTTGCCATCAGGGGCCACTTTCTTATCCCCAATGGTCTGGCCGTTGACCAAAATACCTGCAAGGCAGCATGGGATTGAGGCAAGCTGTTGATATAGATTTGATAGGTGTTATTTATTTGATAAAACAAGTGTCATGTTTTGATTTCATGCCTTCAAAAGACGCATTACTGTCAAAGGTTGGTCAATTCCAAATAATGTCTACTTTCTCCAAATTCACCTGCCAGTTGGTCTCTCACTAGGTTGAAGATGGTACCAGGCCTGTCGTCTATGTTGAAGCACAGTGCATCCTCCTGCTCTGGCAACTCAATCATGAAATGAGGGTCTCCATCCACTGCAGAGCCATCAACATATTGATCCAGTttttacatttgatttggttGAGGCTAAGCCCATCCAAACTTTGGATCACTATATTATTGTCTGTGCGTGACAGCATGGTGGGCATTGAAAATACTAAATATAAATATAACATTTCTGTAGTCATTTTTGGGACAGTTTCACTACATAGAAAATCCTGAAGTAACCCATGTCTGACAAGAGTGTCACTCTGAATGAAGGGGGACTCACCAAAGTTTGTAGGTGAGATCCTGCTGTGCGTCCAGGCGTTGCTCATCAGCTGGGGTACAAAATGACCTGAAAATCACGTCAAGATGTCAGATGACAAATAACGTTTTCCACATTCAAAGTGGTAAAATGCATTTGATGGTGTCAGCTTTCCATGTCATAAATCCAGGTGAtccactataatgacacagaaAGCCATTTTGTTGAAGGATCCAGTCATGTCCATTCATGTCAGGTGCTTACCAAATCTCTGGGCTTTCTGCCTTTCATCTGTCAAACAGTAGCAGGAGaaaaacagtcagacacacataTTTGACAATCGACGCAAGGATTTCCATTACCACTGAGATAAACATGTCAGATAAGACACGCCAGATGTACTGGTTGTCtccccctgcccctgcccctctcCCAACCCACTGGGTCACATACCCTCGGTCAGCTTGTCGGCGATGAGGGGGCCCTCTGGCTCCTCGTCAGTCTCAGGTTTGGTGACCACCATGGAGGTAAGGGGGGTGACGAAGCTGTACTGCAGGGACATCTCCAGAGCCTGGGCAGTAGCATTTCCTTTCTCCTCCGCAGTACCAGTCTCTCTGACAATAGAAACATAGGACGAATGGTGTTATTGCATTaggttaggattagaggttagGTTCGGTTTAACTTGGGTTAGGTTTGGTTTAACTTACACCACAGGGCAGAAAAGAATGGAATATTTACGAACTGAGTTCCTTTAATATACCCAGCTCCATTCATTAGATCCCAAAGCTAAGCTCTCATCCACCAGTGAGTTTTAGGCATTTGGATAATGCTAAGACACAATTCAGTTCATTCACCAGACATCAGTAATAGCAGTTAGTCGATCACACAGACCTCTTGCTTAACAGTTCTTGGATGGTGAGGTAAGCCCAAAGACGCTCAGTGTAGTCCCCAAATATGTACTCCTGCTCAGGGTACAGTATGTCCCACTCCTGGGCACTGGCCTGGCCTTTGATAATAAAGTCCTCCTCATACtaaaaagagagtgagggagtgagagagaagagaaagaggtaTTAGACacagagaaggagtgagagagaagcaTTAGTTGGGTTGAGTATTGTCCAATACTTGAGTCGCAATGCCCTTCAGGTGCAAAGAAAATATAATCTTTCTAAGCTTAGTATCcgggtggtgtgttgtgttgtgcctgTCTGTTCCTCACCCCATGTGCAAACACCTCCACCAGGAAGTTATCCAGGCTATAGTCAGTGAGCCGGCCAGCTACCACGATCTCTGAGCCGTTGAACAGCTGCTTGTAGTGACTGGTAGTCAGAGAGTTCACCAGGTTGTCAGGGTAACGCAGGTCCACCTCGGAGAGGAGGGGGCTGGCCACTTCCTCATAGAAACCCTGGGACACAAATGCACACATCACCAAGTCATTTGTCTATTGCAATTTTTGACAGTACATTATCAATAATGCCAAAACGTAGGATGGATATAAGACCTCGACCTACATAGTTTTGTCTGTCCTGTGACGCTCCCCATAAGTGATATGGTCAAACCAGAAAGACACAGAAAAGTGACTATTGTGAGATTTGGGACAGAGCCCTGGTTCACACCTGAAGCTGGACGGTGGCATCAGAGCCCTCATAGATCCTTCGGGCCAGTCCCTTGTTCTGTCTAGACATCACATCCAGAAAGGAGTAGTCCACATCATCCCCAAAGCCCAGACAGAACAGAGTCATGTTCCCACCCATAGCAAGAAGGACATTCTCCTGAATCTGTGGTACAGAAGACTCtcctgtacacaaacacacatggcaTGTACCATGACCTTACTGGCTGGATCTAATATAGAGCAATACATCAGATGGCTACTTCAACGTTAAAATGGCAGTCCCAACCAAATAAGTAAGATCAGAAGGGAAGGAAACCTGTACGCACCTGAGTTGGGCATTCCATCTGTCATTAAGATAACCATAGACACACTCCTCTCCGGGACCTTCTTGTCTCGTTTGCCTTTCATTATCATGTCCACAGCTTTCATCACAGCATCATTTATATTAGTGGCTAAAAGGAGAACACTTCCCGAAACAGTTATTCCCTGGATAAATTGTTGGGCTTTTGACACATTTTCCTTGGTGGCCTTGGTAAGAGATTCCTTCCATGTTGAGATGCTAGAGTCAAATAGGACAATGCCGAAGTAGTCGTCCTCAGCCAGGTCATTCAGGATGGCCAGCATAGCTTCCTTTGTCTACGAGGGATCAAAGGCTCTCAGGTCAATCTGAACATGAACTACAATTACAGCACTGCAACCAAGTGATATGTTTCCTgcatccttctctctttcatctTCTCTgatatttctttctttcattctctcagACACACGGTTTCTCTCTTACCTGCTTCATTTTGATTCCGCTCATTGACCCACTCCTATCGATCACAAACACCACATTTTTTGGAACTCGGGGTAAGTCCGAAGGCGCAAAGAAGTGCACAAAGTACCCATTCACTATCTGAAAAATACATACAATGAATATCATTATGACATGAACACCCTGAATtgatggaattgaccccaataCTGATTCTATATTATATTCAACACAGCTGACTTGGATGTCACCGATGGTCTCAGCTCGGTTCACGTCATATTTGATGAAGAAATCCCCGTCAATCAGGGTGCCTTCACAACCCAGGCACTTCCTCTGCTGGTCCAGTGTTGGGCAGAATGAGATGTGTGCCTTTTTTGTCGCTGACTGTTTTCTCCACCAGGGGGAGAAGCTCGTTGGAGATGAAGGTTCCATAGGCCTCCAGGAAGGCAATGCCCTGGGGTTCATAGATATCTGCCACAATCTGTCACAGAGACATGAACAGGACTGATGAGACACAGGACTGAGGAGTCAAGATGATGACAAGATGTTTTGGGGTATAGGGTGTGAACATCTACAGACCTCAAAGTGCTGAACCAGCTGCTTGGGTTTGACCCGGGTCATGATCTCGTATTGGCCCAGTTTACGCTGAAGCAACTCCTCGTGGGTCAAAATGAAGGTGACGTTACTATTGGCCGCGATGTTCACAGACACAGTGAACTTCTCCATCTTCCTCCCTGATGCCCTAGAGTACACAAACACAGGCCCAGTAGGAGGGCAATCACATTTTACACAGGCCCAGTAGGAGGGCAATCACATTttaaacaaaacacacaaacacaggcccaGTAGGAGGGCAATCACATTTTACACAGGCCCAGTAGGAGGGCAATCACATTttaaacaaaacacacaaacacaggcccaGTAGGAGGGCAATCACATTttaaacaaaacacacaaacacaggcccaGTAGGAGGGCAATCACATTTGCAACAAAACACAGGCTGTGATGAAAGAGAATAGGAGTGCCTGGTGTAATGGAAACACGTTTGTACACTCCTCATTGCCCTGGTCCACTCACTTGACCAGTCCTGCAGTCTGCCCTGTGGAAACAGCTTTCTGATACTGCTTCTTggctttctccttctccttcacctCGCCCGTGTACGTCTGACCCTCTATCTCCCTGAGATACACAAACACAGTcattcaaacaaacaaacagaaacacataTATCTGCATACGTATATCTGCACTCACACGCAggtatacacacatacaaacacacacatacacacacagcgcaGAGTAACAGTCCTATGGATTGGTGTTATCATTTCTAGACATAACGTGGCTTCTACACACGCCATGGGTGCTGACTGACATGCTGAAGTTGGTGATGAAGGCGGTCTTGGGCAGATCCACCTCGAAGAACACTTCCTGAGAGGAGTTGGCCTTGTTCAGAGCACTGGAGGTTATGACCGTGTGAGCAAAACGAGAAGCGACCTTACAATCCACCTTTAAACTGTACACCTCCAcctgagagagtaagagagaaagtaagagagagagaggatgagagacagggagagagtgaaagaaaggagaaagaaacAGAAGGGTTTTGAAATGTTTGCTTGACTGTCTAACGTGCCTATAAAACGTTCACACACTttctcaaaatgtattttcctgtTACAGCTGAATAGTGTGAAGTAAGCTGCACCGACTACAAGATTACTGCCAAAACAAATGATTACCGCTGTACTCTTGTGAAAAACATTAACTCAGTGTTTCCAGTAGAAAGACTCGATGAGTCAATCTGGGTGAGCAAAGGCACGTATTTCTAGTGTTGAATATAGTGGTGGCAATGCATGATCATCACAAATAGAACGTAAATATTGTGATTTCCTTACCTCCGCATTATCTGTACTtcttttctgtaaaaaaaaaaaaagaataacatTTAGACACAGTATTATAAAACATACGTTTCTTACAGAGCAAACTGTACGACTTAGACATTTTTTACTTTTCAAGTGGCTGAAACTTCTAGGTGCCAATGATACTGTTGTATTTACAGAAATAGAGAGTAGTTTAACCGTGGCAAAGAGCGAAGGATTTCCTAAAATATTTACTCAACCACATTCTCAAAAATCTGTTTTTGGGAAAATACAAATAACAATATATTAATCAGATTCATCAGGTATCATCAGATTCATCAGGTATCATCAGATTCATCAGGTATCATCAGATTCATCAGGTATCATCAGATTCATCAGGTATCATCAGATTCATCAGGTATCATCAGATTCATCAGGTATCATCAGATGCACCACTGGGTGGTCAAGAGTAGAAGTCTGACGGATTCTGCAACAGATTCCTGTTTTGGATTTGTGTCAGACAGGTTTGTGTCGATGCTGAGCTACCTTTAGTAGCCGTGTAGCACCATCAGAGCCCTGGGATACAAAGCACAAGGGAGAAGTTTGAATTTAGGGTCAGAACGTCAAACTAATTTAACACCTCATAGTCTAATTCATTGTAAAGCATAAACATATTGGCATGAATAAAAATGGATTAATGTACACAGGAGCATGCACAGACACCCACACCCACATACACGAAAGCAGACCAGATATGAATCAAAGTAGAGATGTGTTGACAGAAAAGTAGAAACGGTACAGATACACATCAAGTAAATAGAGTAACAGTAGAGTATATCAGGAGGGGTGAGATGTagtaacagaacagtatagcagcaggggtgagatgtagtaacagtagagtatagcaggaggggtgagatgtagtaacagtagagtatagcaggaggggtgagatgtagtaacagtagagtaTAGCAGGAGGgttgagatgtagtaacagtagagtatatcaggaggggtgagatgtagtaacagaacagtatagcaggaggggtgagatgtagtaacagtagagtatagcaggaggggtgagatgtagtaacagaacagtatagcaggaggggtgagatgtagtaacagtagattatagcaggaggggtgagatgtagtaacagtagagtaTAGCAGGAGGGTTGAGATGTAGTAACAGGACAGTATAGCAGGAGGagtgagatgtagtaacagtagattatagcaggaggggagagatgtagtaacagtagattatagcaggaggggtgagatgtagtaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702423 lncRNA upstream 3540 49264906 ~ 49271638 (+) True G617315
TU702420 lncRNA upstream 9898 49235981 ~ 49265280 (+) False G617315
TU702403 lncRNA upstream 89937 49184607 ~ 49185241 (+) True LOC110527950
TU702409 lncRNA upstream 91089 49183850 ~ 49184089 (+) True G617305
TU702408 lncRNA upstream 91429 49183522 ~ 49183749 (+) True G617304
TU702465 lncRNA downstream 4824 49287795 ~ 49289689 (+) True G617347
TU702462 lncRNA downstream 9715 49292686 ~ 49297618 (+) True G617346
TU702489 lncRNA downstream 14958 49297929 ~ 49301234 (+) False trnae-cuc-4
TU702482 lncRNA downstream 15639 49298610 ~ 49300605 (+) False trnae-cuc-4
TU702484 lncRNA downstream 15639 49298610 ~ 49301234 (+) False trnae-cuc-4
XM_021609591.2 mRNA upstream 88209 49172522 ~ 49186969 (+) False LOC110527950
trnae-cuc-4 mRNA downstream 15535 49298506 ~ 49298577 (+) False trnae-cuc-4
trnae-cuc-5 mRNA downstream 22532 49305503 ~ 49305574 (+) True trnae-cuc-5
XR_002474075.2 mRNA downstream 101331 49384302 ~ 49386132 (+) True LOC110527119
XM_021609608.2 mRNA downstream 190555 49473526 ~ 49487883 (+) False LOC110527957
XM_021609606.2 mRNA downstream 190582 49473553 ~ 49487883 (+) True LOC110527957
TU702226 other upstream 447951 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 1435456 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 2637224 46632122 ~ 46637954 (+) True LOC110528958
TU698525 other upstream 2995845 46278734 ~ 46279333 (+) True G613664
TU695458 other upstream 5246950 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU703098 other downstream 289349 49572320 ~ 49620168 (+) False tafa4b
TU703100 other downstream 303899 49586870 ~ 49620168 (+) True tafa4b
TU703948 other downstream 1020459 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 1677523 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 3108377 52391348 ~ 52391633 (+) True G621650

Expression Profile