RNA id: TU702834


Basic Information

Item Value
RNA id TU702834
length 2583
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G617650
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49298645 ~ 49301227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caagaccgtgcaggacgtttttcatttgccagagaacaccaagattggcaaattcgccactggcgccctgtgctcttcacagatgaaagcaggttcacaccgagcacatgtgacagagtctggagacgcagtggagaacgttctgctgcctgcaacatcctccagcatgaccttgatgctatggactggcccgcccgttccccagaccagaatccaattgagcacatctgggacatcatgtctcgctccatccaccaatgccacgttgcaccacagactgtccaggagttggcggatgctttagtccaggtctgggaggagatccctcaagagactatccgccacctcatcaggagcatgcccgtgcgttgtagggaggtcacacaggcacgtggaggccacacacactactgagcctcattttgacttgctttaggacattacatcaaagttggatcagcctgtagtgtggttttccactttaatttggagtgtgactccaaatccagacctccatgagttgataaatttgatttccattgataatttttgtgtgattttgttgtcagcacattcaactatgtaaagaaaaaagtacttaataagaatatttcattcattcagatctaggatgtgttattttagtgttccctttatttttttgagcagtgtatttttaaacctgcatattttgcacacaaaaaatccaggttagcaggcaatattaactaggtgaaattgtcacttctcttgcgttcattgcacgcagagtcagtgtatatgcaacagtttgggccgcccttttgccagaattgtacgtaattatgacatacattgcacaaccttcaatgttaacaggaatatttagatttatggatgccacccgttagataaaatacggaacggttccgtatttcactgtaataataaacgtcttgttttcgagatgatagtttccggattcgaccatattaatgacgtaagactcgtatttctgtgtgttataatgttataattaagtctatgatttgatatagcagtctgactgagtggtggtaggcaccagcaggcttgtaagcattcagtcaaacagcacttttgtgcattttgccagcagctcgtcgctgtgcttcaagcattgagctgtttgacttcaatcctatcaactcccgagattaggctggtgttgACATTTTGCTGAAATCCAGTcaggtgtgtttttttttgtggttttTGGCGAATGCGTAATAATGATTTAAAGTCGCGCTGTTGCAAcagcctgtaaacacacagtccagttcaaagtgaatgattgCAGGCACGTGTTTCAAATTACTTGTTTGTATGAAGGTCTACTATAGCTCTGATTAGCTATAGCGGTCCGTTCCGTGTCGTCTCCGGTCCTGGACAAGACCAATGGTttttattcgtttttttttttgtacagcagtgtctattaattgccCAAACGCTCGGCCGCTTTCCCACTCTCTATTTTCACAAATCCTTTAGAATACTTCATtccaaacattctaagaatttaGGAAACcatgaaaatgaccatatctaattTGTCACTTGTCAGAATAATTTTTTAAAGTgtcattcttcctgggggtgtatatgaacagatttcaTGTTGAAAAAATGCGGTCAGTTCCACTTTGAATGCAGCAGTGTTCCACACAAATAAGTTATTTCCGTACTtctttctacatctgcattgcttgcgttttggggttttaggctgagttagtgtacagcactttgtgacatctgctgatgtaaaaaagggcgttataaatacatttgattgattgatggctAACAGCAAGCACGCTGCAATAGAAAAGTTCCACTCACCAGATGATGATCATTTGAAACTTCTTGTTGAAAGTTATTCTTTAAATGGGagaagctaacaaattagcaacaacatcctCTTTGATAACACCTGCTGCAGCCCTGTAAACTGTTAACCCTTTCCATCCAACAAAAACTGATGATTAAATCAGAACATCATTTTAAAATAGTATAATTTAtaattattttataaatcctAAGCCCTTTCCTTAGCCCATTGTTCCCCAGTGTGTTTGGGTTAGTAATAACTTGTAGAGTGGCTCTATTTGCCCTCAGCATGCATTTATTCACTATTATGAATATCTAAAATATCCATATGTtattctgaaatatgaacacagaaatactggacatttttAACTCCTATGGTGGTGATTTGACAATAACATtcatggtcttgaattggactcgCATTTTTCTGGTCTTGACTTTGTCGTCCCCCCTTCCTCAGGTCTAGGTGTTGAATCGGTCTCGCTTTAGGTGACCAGGAACACAACACAGAGTGTCTGTCTTAAGGAGTGGTGATACAGTAAATGTGGTGATAATGAACTGTTTGAGTAGGATGTTGGCTGAGGCAAAGGAATAACTGACTGTGGGGTTTGGTAAACGGTGGTGCAGGTTGTCCTCCGTTCAACAGAGGGATTTTATTGTAAAAACTAAAATGACTGGCAAAGGATCGACTTACATTACCATTAAAAATGATTTTACAATAAAGTTTgt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU702820 lncRNA downstream 30512 49205572 ~ 49268133 (-) False G617637
TU702818 lncRNA downstream 30512 49264855 ~ 49268133 (-) True G617637
TU702807 lncRNA downstream 107087 49191356 ~ 49191558 (-) True G617628
TU702799 lncRNA downstream 117074 49180790 ~ 49181571 (-) True G617621
TU702795 lncRNA downstream 120548 49174363 ~ 49178097 (-) True G617618
TU702920 lncRNA upstream 112899 49414126 ~ 49414400 (-) True G617730
TU703079 lncRNA upstream 241526 49542753 ~ 49542966 (-) True G617875
TU703080 lncRNA upstream 241800 49543027 ~ 49543236 (-) True G617876
TU703081 lncRNA upstream 242093 49543320 ~ 49543686 (-) True G617877
TU703082 lncRNA upstream 242876 49544103 ~ 49544412 (-) True G617878
XM_021609600.2 mRNA downstream 1340 49295040 ~ 49297305 (-) False mustn1b
XM_021609596.2 mRNA downstream 8841 49275181 ~ 49289804 (-) True LOC110527952
XM_021609589.2 mRNA downstream 154492 49136688 ~ 49144153 (-) True LOC110527948
XM_021609583.2 mRNA downstream 180807 49115044 ~ 49117838 (-) True LOC110527945
XR_002474175.2 mRNA downstream 210450 49083910 ~ 49088195 (-) False LOC110527944
XM_021609597.2 mRNA upstream 1929 49303156 ~ 49317526 (-) False LOC110527953
XM_036983435.1 mRNA upstream 1929 49303156 ~ 49317530 (-) False LOC110527953
XM_036983436.1 mRNA upstream 1929 49303156 ~ 49317531 (-) True LOC110527953
XM_036983434.1 mRNA upstream 16357 49317584 ~ 49334930 (-) True LOC110528962
XM_036983440.1 mRNA upstream 41131 49342358 ~ 49357758 (-) False LOC110527955
TU702832 other downstream 1397 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 102675 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 112549 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 113190 49184424 ~ 49185455 (-) False G617624
TU701964 other downstream 769477 48487047 ~ 48529168 (-) True G616880
TU703492 other upstream 358808 49660035 ~ 49936281 (-) False LOC110527961
TU704151 other upstream 1003221 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 1655044 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 4004309 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 5771252 55072479 ~ 55075396 (-) True G625426

Expression Profile