RNA id: TU703170


Basic Information

Item Value
RNA id TU703170
length 449
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G617960
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49636365 ~ 49636813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaaggagaggaccaaagcgcagcgtggttagtgttcatcttatttaataataatccaaactgaacacttcaaattacaaaacaacaaatgtgaaaacagtcctatctggtgcatagacagaagacaaccaaccacagaatatggctgcctaaatatggttcccaatcagagacaacgatagacagctgcctctaattgagaaccaatctaggcaacgaTAGACctacaaactacctagaaaggaaacagacccataaacatacaaaaaaccctagactagacaaaacacataaatcccccatgtcacaccctgacctaaccaaaataataaagaaaacaaagataactaaggccagggcgtgacaactgtACTTTTTGCCATttaataagaatgtgttattaaATGTGTTTCTGTAGGCTTTAGTAGAAAAGGCCaaaatcaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU703153 lncRNA downstream 14754 49621346 ~ 49621611 (-) True G617943
TU703095 lncRNA downstream 67306 49568825 ~ 49569059 (-) True G617891
TU703082 lncRNA downstream 91953 49544103 ~ 49544412 (-) True G617878
TU703081 lncRNA downstream 92679 49543320 ~ 49543686 (-) True G617877
TU703080 lncRNA downstream 93129 49543027 ~ 49543236 (-) True G617876
TU703174 lncRNA upstream 2656 49639469 ~ 49640105 (-) True G617964
TU703494 lncRNA upstream 23222 49660035 ~ 49696768 (-) True LOC110527961
TU703509 lncRNA upstream 49375 49686188 ~ 49686853 (-) True G618283
TU703598 lncRNA upstream 176916 49813729 ~ 49814192 (-) True G618369
TU703987 lncRNA upstream 455789 50092602 ~ 50092970 (-) True G618748
XM_021609604.2 mRNA downstream 202983 49389037 ~ 49433382 (-) False LOC110527956
XM_021609605.2 mRNA downstream 202983 49389037 ~ 49433382 (-) True LOC110527956
XM_036983439.1 mRNA downstream 255681 49342358 ~ 49380684 (-) True LOC110527955
XM_036983441.1 mRNA downstream 255682 49342358 ~ 49380683 (-) False LOC110527955
XM_036983440.1 mRNA downstream 278607 49342358 ~ 49357758 (-) False LOC110527955
XR_005052595.1 mRNA upstream 23209 49660022 ~ 49936559 (-) False LOC110527961
XM_021609612.2 mRNA upstream 23209 49660022 ~ 49936575 (-) False LOC110527961
XR_005052596.1 mRNA upstream 29639 49666452 ~ 49936562 (-) False LOC110527961
XM_021609615.2 mRNA upstream 642798 50279611 ~ 50300137 (-) True LOC110527963
XM_021609616.2 mRNA upstream 663551 50300364 ~ 50306278 (-) False LOC110527964
TU702832 other downstream 339117 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 440395 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 450269 49184424 ~ 49186096 (-) True G617624
TU702802 other downstream 450910 49184424 ~ 49185455 (-) False G617624
TU701964 other downstream 1107197 48487047 ~ 48529168 (-) True G616880
TU703492 other upstream 23222 49660035 ~ 49936281 (-) False LOC110527961
TU704151 other upstream 667635 50304448 ~ 50306156 (-) True LOC110527964
TU705034 other upstream 1319458 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 3668723 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 5435666 55072479 ~ 55075396 (-) True G625426

Expression Profile