RNA id: TU703187


Basic Information

Item Value
RNA id TU703187
length 249
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G617976
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49648101 ~ 49648349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacatattctttatccctttacacttgtgtgtataaggtagtagttgtggaattgttaggttagattacttgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcacattaacatctgctaaccatgtgtatgtgacaaataacatttgattttgatttgaacgtgtctccggacctactcactgccacagtcatactctggacctagttttgtcccatggaatacatgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU703094 lncRNA upstream 78711 49568952 ~ 49569390 (+) True G617890
TU703007 lncRNA upstream 82855 49564841 ~ 49565246 (+) True LOC110527959
TU703006 lncRNA upstream 107667 49539936 ~ 49540434 (+) True G617811
TU702962 lncRNA upstream 171290 49457405 ~ 49476811 (+) True G617769
TU702955 lncRNA upstream 195814 49451892 ~ 49452287 (+) True G617763
TU703204 lncRNA downstream 11692 49660041 ~ 49661400 (+) True G617993
TU703874 lncRNA downstream 534938 50183287 ~ 50198852 (+) True G618638
TU703909 lncRNA downstream 585427 50233776 ~ 50234144 (+) True G618673
TU703918 lncRNA downstream 596917 50245266 ~ 50245650 (+) True G618682
TU703921 lncRNA downstream 602122 50250471 ~ 50250675 (+) True G618685
XM_036983443.1 mRNA upstream 27907 49571790 ~ 49620194 (+) False tafa4b
XM_036983444.1 mRNA upstream 27907 49571819 ~ 49620194 (+) False tafa4b
LOC110527959 mRNA upstream 82898 49549811 ~ 49565203 (+) False LOC110527959
LOC110527958 mRNA upstream 98300 49537189 ~ 49549801 (+) True LOC110527958
XM_021608235.2 mRNA upstream 114048 49515173 ~ 49534053 (+) False nhe3
XM_021609613.2 mRNA downstream 451215 50099564 ~ 50229651 (+) True LOC110527962
XM_036983447.1 mRNA downstream 742189 50390538 ~ 50437551 (+) False LOC110527965
XM_036983446.1 mRNA downstream 742192 50390541 ~ 50438666 (+) True LOC110527965
XM_036983456.1 mRNA downstream 948843 50597192 ~ 50795439 (+) False magi1b
XM_036983454.1 mRNA downstream 948843 50597192 ~ 50797049 (+) False magi1b
TU703098 other upstream 27933 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 27933 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 820874 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 1808379 47839388 ~ 47839722 (+) True G615624
TU699203 other upstream 3010147 46632122 ~ 46637954 (+) True LOC110528958
TU703948 other downstream 655081 50303430 ~ 50304232 (+) True G618712
TU705038 other downstream 1312145 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 2742999 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 2842819 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 4105557 53753906 ~ 53754119 (+) True G623180

Expression Profile