RNA id: TU704185


Basic Information

Item Value
RNA id TU704185
length 315
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G618944
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50327117 ~ 50327431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagttcaatcagtagcacacctaatctcaatttctcattgtgtgtgtgtgtgtctttgtgttttttttgtggtgtgtaaatgatTTTATAACTTCCTTGTCAAAAATTACCCTtagacaatctttgtaccctggtggtgtactgctttcatggaaatatgaacaaaggcgatgtttcactttttctaatgttggggtcactcgAGGAAAAGTAATgaaatttcaagttgaaaaaagATAACTTAGtgggttttctctgctgttaaacattgTGGCAGGTCATTTTTGACCCTTAACACAACACAAGGGTtaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU704169 lncRNA upstream 11585 50315232 ~ 50315532 (+) True G618928
TU703921 lncRNA upstream 76442 50250471 ~ 50250675 (+) True G618685
TU703918 lncRNA upstream 81467 50245266 ~ 50245650 (+) True G618682
TU703909 lncRNA upstream 92973 50233776 ~ 50234144 (+) True G618673
TU703874 lncRNA upstream 128265 50183287 ~ 50198852 (+) True G618638
TU704209 lncRNA downstream 25895 50353326 ~ 50353577 (+) True G618968
TU704212 lncRNA downstream 28502 50355933 ~ 50356356 (+) True G618971
TU704231 lncRNA downstream 43134 50370565 ~ 50370810 (+) True G618989
TU704336 lncRNA downstream 114821 50442252 ~ 50442534 (+) True G619085
TU704363 lncRNA downstream 154833 50482264 ~ 50482571 (+) True G619112
XM_021609613.2 mRNA upstream 97466 50099564 ~ 50229651 (+) True LOC110527962
XM_036983443.1 mRNA upstream 706923 49571790 ~ 49620194 (+) False tafa4b
XM_036983444.1 mRNA upstream 706923 49571819 ~ 49620194 (+) False tafa4b
LOC110527959 mRNA upstream 761914 49549811 ~ 49565203 (+) False LOC110527959
LOC110527958 mRNA upstream 777316 49537189 ~ 49549801 (+) True LOC110527958
XM_036983447.1 mRNA downstream 63107 50390538 ~ 50437551 (+) False LOC110527965
XM_036983446.1 mRNA downstream 63110 50390541 ~ 50438666 (+) True LOC110527965
XM_036983456.1 mRNA downstream 269761 50597192 ~ 50795439 (+) False magi1b
XM_036983454.1 mRNA downstream 269761 50597192 ~ 50797049 (+) False magi1b
XM_036983448.1 mRNA downstream 269761 50597192 ~ 50798627 (+) False magi1b
TU703948 other upstream 22885 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 706949 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 706949 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 1499890 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 2487395 47839388 ~ 47839722 (+) True G615624
TU705038 other downstream 633063 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 2063917 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 2163737 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 3426475 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 4496206 54823637 ~ 54824199 (+) True G624628

Expression Profile