RNA id: TU704759


Basic Information

Item Value
RNA id TU704759
length 1306
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G619478
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50705082 ~ 50798597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcatcatcatcatagttcAACTTTATCCTCCCCTTCATTTGTTTAAAATGATCACCTCTGAATTTACACATACTGCACACTGTCCAAAAATATACAAACAAATGCAGGCTTGTGCTATAGTCTGGTCAAATGTCTAAAAACAGTGGCactgggggagagaaagaaaagagaagacATTGAAACCGTAAAGACATGCACAGCATCTGTGTCAGTGGCACCAGTCACTGGGGCTGTGTAATGCCTACCTCCTTGGGCTCAGTGGAAAAGTACATACCACTTTCGGCTGAGAAAACACTCATCTCATATCAAACAAAGACAAAAGAAAAATACACTCATTAAAATAACTGTTAGGCACATCATTGTTTTTTTTCGGTTTTACATTTTCTGCAAAATTCTGATAAATATACAATGCTTAACCAACTAAcgaccccccaaaaaatccaaCAAACAGAAAAAGTTGATAGGTTTTGGAATCACTGTCTAGTAGGAAAGCAGGAATGTCATATAATCAATACATTTGGTTCATCCAAGGTCCAGGTGTGTTCTGCTGTGTGAAGAGTAGAGCTGAGTGGTGAGGGGGAACTGTGTTGCTGTGGGGAGGTTGGAGGGAAGGCTGGTTGTGTTACAGCAGATGACCCATCAGATGCTCAGGTCTTTGGTGCCATCTTTATGGGCCTTCCGCTTGGGCTTCGGGAGAGCTTTGGAAGCACGGCTGGCATTAGACTTAAGTGTGCTGTAATACTCTTTCAGTCTGGGTgctgcctcttcctcctcctccggttCTCTGAAGCTTCTGACAGGTGAAATGTCTTGGCCCAGGCTACGGGCTCTATGGTGGGGGTCTGGGGAGCGcggctctctctccactctctcaggCGAGCGGCCCCTTAGCAGTGAGCTGTACCTCTTGTAGGCGCTGTCTGACTCAGGGGTGTGGACCCTGGGAAGGATCTCCCCTCTCTGGCCACGGGCAGCAGCAGATAACAGGCTGTCTCCTCTGTAGTCACGCTCCAGGTTGGAGGCCGTCAGCAGAAGGCTGTCCTCCCCAAACAGGTGCTCCTCTCTGGACTCCCTCAGTCGCGTGACCTCCCTGTTGAGCTGGTCCAGGGCTGGGGGCTCCTGTAGGAGGCTCTCATCCAGGAAGGGGCTGGGCACAGGGCCAGGAGGCTTCCTCAGCACTGGTGCCTTCTCCCCGTTGggcctctctggctctctgtgtcgctgtctgtctaGGGAGGGCTGCCGGTAGGGGTCTGAGGATTGGGTACGGCGtcggggggggggggggggggggggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU704628 lncRNA downstream 146109 50550860 ~ 50558973 (-) True G619353
TU704599 lncRNA downstream 195041 50509424 ~ 50510041 (-) True LOC110528963
TU704377 lncRNA downstream 215438 50489424 ~ 50489644 (-) True G619126
TU704349 lncRNA downstream 246920 50457881 ~ 50458162 (-) True G619098
TU704341 lncRNA downstream 255923 50448952 ~ 50449159 (-) True G619090
TU704881 lncRNA upstream 40695 50839292 ~ 50839529 (-) True G619584
TU704899 lncRNA upstream 53895 50852492 ~ 50852793 (-) True G619602
TU704989 lncRNA upstream 88426 50887023 ~ 50893816 (-) True G619688
TU705033 lncRNA upstream 156867 50955464 ~ 50956197 (-) True G619732
TU705145 lncRNA upstream 198976 50997573 ~ 51037061 (-) False G619833
LOC110528963 mRNA downstream 164497 50509473 ~ 50540585 (-) False LOC110528963
XM_021609616.2 mRNA downstream 398804 50300364 ~ 50306278 (-) False LOC110527964
XM_021609615.2 mRNA downstream 404945 50279611 ~ 50300137 (-) True LOC110527963
XM_021609612.2 mRNA downstream 768507 49660022 ~ 49936575 (-) False LOC110527961
XR_005052597.1 mRNA upstream 138612 50937209 ~ 50939964 (-) True LOC118965294
XR_005052598.1 mRNA upstream 288692 51087289 ~ 51091164 (-) False LOC118965295
XR_005052599.1 mRNA upstream 288692 51087289 ~ 51091164 (-) True LOC118965295
XM_021609626.2 mRNA upstream 298860 51097457 ~ 51112064 (-) False LOC110527971
XM_036983464.1 mRNA upstream 298860 51097457 ~ 51146059 (-) False LOC110527971
TU704151 other downstream 398926 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 768801 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 1407834 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 1509112 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 1518986 49184424 ~ 49186096 (-) True G617624
TU705034 other upstream 157674 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 2506939 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 4273882 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 4365895 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 4634859 55433456 ~ 55434072 (-) True LOC110528020

Expression Profile