RNA id: TU705653



Basic Information


Item Value
RNA id TU705653
length 936
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G620282
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51485916 ~ 51487101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCATGTGTGTGGTCTTGCCTTACCTTTGGATGCCTCCGTTCCGTACGGGTTGCCCAGGCTGTCCATCAGGTCAGGTAGCCAGGCATCTCTGACTGCGGACTTGAAGACGTCACGGTTGTCAAGGCTTTGGATTGGCCGGAAGTTGCTCCTCAGGTATTCCACAGACTTCACATGGTCCTGCTGCTCTGTGGTAAAGATGGAGTAGAACGCCTCCAGctaaaataaagaaagaaagagagaggtagagaaagagagcggtagagaaagagagcggtagagaaagagagaggtagagaaagagagcggtagagaaagagagagatagagaaagagagagatagagaaagagatagagaaagagagcggtagagaaagagagaggtagagaaagagagcggtagagaaagagagagatagagaaagagagagatcgagaaagagagaggtagagaaagagatagagaaagagagcggtagagaaagagagcggtagagaaagagagagatagagaaagagagaggtagagaaagagatagagaaagagagaggtagagaaagagagagatagagagaggaagacagaaaaacacacaccTTAAGGAGGAGAGAAATGACCATAATGCATGTTGAGGATATTGAAACCTCTGACATCATGTGAACTGGAAAATTGAATTCATGAGCTGATTTGTTTTGTTCATGGCATCTTTCAAGCAGCCAATGCCCAGTGAGATCCTATTTTCCTTTGCCCATACATGTGTAATGCTGTAATCTTGTTCCTAGCTGAGAGTCTAAGAGGCGTGAAGGGCCAAGCTAGCCCAGCCTAATCAGGGGAATAGCGTTCATgaagcaaacacaaaaacatgctgtccccctcctctcctctcctcagcccagAGAAGaacaaccaccaccacagaaTAACCACTATCCGACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU705618 lncRNA upstream 39342 51446341 ~ 51446574 (+) True G620252
TU705592 lncRNA upstream 50710 51434281 ~ 51435206 (+) True G620230
TU705315 lncRNA upstream 234380 51250187 ~ 51251536 (+) True G619981
TU705287 lncRNA upstream 293933 51189822 ~ 51191983 (+) True G619953
TU705207 lncRNA upstream 397485 51088019 ~ 51088431 (+) True G619890
TU705669 lncRNA downstream 21144 51508245 ~ 51508461 (+) True G620298
TU705679 lncRNA downstream 45325 51532426 ~ 51532700 (+) True G620308
TU705712 lncRNA downstream 83897 51570998 ~ 51571286 (+) True G620340
TU705804 lncRNA downstream 212158 51699259 ~ 51699722 (+) True G620429
TU706070 lncRNA downstream 267091 51754192 ~ 51754423 (+) True G620685
XM_021609631.2 mRNA upstream 52851 51429630 ~ 51433065 (+) True LOC110527974
XM_036983477.1 mRNA upstream 67567 51252126 ~ 51418349 (+) False LOC110528964
XM_036983483.1 mRNA downstream 958018 52445119 ~ 52489548 (+) False si:ch211-236d3.4
XM_036983484.1 mRNA downstream 958020 52445121 ~ 52489548 (+) False si:ch211-236d3.4
XM_021609634.2 mRNA downstream 982632 52469733 ~ 52489548 (+) True si:ch211-236d3.4
XM_021609638.2 mRNA downstream 1024169 52511270 ~ 52548815 (+) False LOC110527978
XR_005052600.1 mRNA downstream 1024169 52511270 ~ 52548815 (+) True LOC110527978
TU705038 other upstream 411909 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 1181684 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 1865748 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 1865748 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 2658689 48826827 ~ 48827227 (+) True G617133
TU707063 other downstream 904247 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 1004067 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 2266805 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 3336536 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 3560195 55047296 ~ 55052688 (+) False G624962

Expression Profile