RNA id: TU705890



Basic Information


Item Value
RNA id TU705890
length 672
lncRNA type intronic
GC content 0.48
exon number 1
gene id G620510
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51524348 ~ 51525019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggatggttccgacctagaatatgtggacatctataagtacctaggtgtctggctagactgtaaactctccttccagactcatatcaaacatctccaatctaaaatcaaatctagagtcggctttctattccgcaacaaagcctcctttactcacaccgccaaacttaccctagtaaaactaactatcctaccgatcctcgacttcggcgatgtcatctacaaaatagcttccaacactctactcagcaaactggatgcagtttatcacagtgccatccgttttgttactaaagcaccttataccacccaccactgcgacctgtttgctctagtcggctggccctcgctacatattcgtcgccagacccactggctccaggtcatctacaagtccatgctaggtaaagctctgccttatctcagttcactggtcacgatggcaacacccacccgtagcacgcgctccagcaggtgtatctcacgaatcatccctaaagccaacacctcatttggccgcctttcgttccagttctctgctgcctgtgactggaacgaattgcaaaaatcgctgaagttggagacttttatctccctcaccaacttcaaacatctgctctctgagcagctaaccgatcgctgcagctgtacatagtctatcggtaaatagcccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU705889 lncRNA downstream 54 51524072 ~ 51524294 (-) True G620509
TU705883 lncRNA downstream 8796 51514121 ~ 51515552 (-) True G620503
TU705880 lncRNA downstream 11937 51512210 ~ 51512411 (-) True G620500
TU705603 lncRNA downstream 90615 51433342 ~ 51433733 (-) True G620237
TU705601 lncRNA downstream 91365 51431446 ~ 51432983 (-) True G620236
TU705893 lncRNA upstream 5508 51530527 ~ 51530767 (-) True G620513
TU705894 lncRNA upstream 6012 51531031 ~ 51531232 (-) True G620514
TU705931 lncRNA upstream 47762 51572781 ~ 51573021 (-) True G620550
TU705850 lncRNA upstream 126599 51651618 ~ 51726441 (-) True ptprga
TU706396 lncRNA upstream 437335 51962354 ~ 51962578 (-) True G620996
XM_036983469.1 mRNA downstream 317139 51179203 ~ 51207209 (-) True LOC110527973
XM_021609629.2 mRNA downstream 317149 51179203 ~ 51207199 (-) False LOC110527973
XM_021609622.2 mRNA downstream 372328 51097457 ~ 51152020 (-) True LOC110527971
XM_036983465.1 mRNA downstream 372332 51097457 ~ 51152016 (-) False LOC110527971
XM_036983463.1 mRNA downstream 372335 51097457 ~ 51152013 (-) False LOC110527971
XR_005052729.1 mRNA upstream 928820 52453839 ~ 52453893 (-) True LOC118965403
NM_001124638.1 mRNA upstream 1058770 52583789 ~ 52658755 (-) True camk1b
NM_001165223.2 mRNA upstream 1144433 52669452 ~ 52672456 (-) False spcs1
XM_021609641.2 mRNA upstream 1166322 52691341 ~ 52696837 (-) False gnl3
XM_021609642.2 mRNA upstream 1166322 52691341 ~ 52696843 (-) True gnl3
TU705034 other downstream 565808 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 1218192 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 1588067 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 2227100 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 2328378 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 1780517 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 3547460 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 3639473 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 3908437 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 5166304 56691323 ~ 56696091 (-) True G627254

Expression Profile