RNA id: TU706855


Basic Information

Item Value
RNA id TU706855
length 327
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G621449
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52257164 ~ 52257490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaacgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctctgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagtggaccataaacagatttggctcattaatctctagggtccaaataatgatgatccagaatcctttgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU706555 lncRNA upstream 187972 52068947 ~ 52069192 (+) True G621155
TU706536 lncRNA upstream 203577 52053242 ~ 52053587 (+) True G621136
TU706473 lncRNA upstream 237520 52019312 ~ 52019644 (+) True G621073
TU706415 lncRNA upstream 278122 51978648 ~ 51979042 (+) True G621015
TU706403 lncRNA upstream 286728 51970131 ~ 51970436 (+) True G621003
TU706856 lncRNA downstream 688 52258178 ~ 52258438 (+) True G621450
TU706860 lncRNA downstream 3431 52260921 ~ 52261121 (+) True G621454
TU706895 lncRNA downstream 22926 52280416 ~ 52280625 (+) True G621489
TU706968 lncRNA downstream 68338 52325828 ~ 52326081 (+) True G621561
TU706969 lncRNA downstream 69077 52326567 ~ 52326785 (+) True G621562
XM_021609631.2 mRNA upstream 824099 51429630 ~ 51433065 (+) True LOC110527974
XM_036983477.1 mRNA upstream 838815 51252126 ~ 51418349 (+) False LOC110528964
XM_036983483.1 mRNA downstream 187629 52445119 ~ 52489548 (+) False si:ch211-236d3.4
XM_036983484.1 mRNA downstream 187631 52445121 ~ 52489548 (+) False si:ch211-236d3.4
XM_021609634.2 mRNA downstream 212243 52469733 ~ 52489548 (+) True si:ch211-236d3.4
XM_021609638.2 mRNA downstream 253780 52511270 ~ 52548815 (+) False LOC110527978
XR_005052600.1 mRNA downstream 253780 52511270 ~ 52548815 (+) True LOC110527978
TU705038 other upstream 1183157 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 1952932 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 2636996 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 2636996 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 3429937 48826827 ~ 48827227 (+) True G617133
TU707063 other downstream 133858 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 233678 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 1496416 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 2566147 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 2789806 55047296 ~ 55052688 (+) False G624962

Expression Profile