RNA id: TU706968


Basic Information

Item Value
RNA id TU706968
length 254
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G621561
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52325828 ~ 52326081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgtgtttgggatcattgtcatgctgaaagacccagccaggtttcctcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcatgacacatggccccattcattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcaactcagcattctttgtcctccaaacacgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU706895 lncRNA upstream 45203 52280416 ~ 52280625 (+) True G621489
TU706860 lncRNA upstream 64707 52260921 ~ 52261121 (+) True G621454
TU706856 lncRNA upstream 67390 52258178 ~ 52258438 (+) True G621450
TU706855 lncRNA upstream 68338 52257164 ~ 52257490 (+) True G621449
TU706555 lncRNA upstream 256636 52068947 ~ 52069192 (+) True G621155
TU706969 lncRNA downstream 486 52326567 ~ 52326785 (+) True G621562
TU706995 lncRNA downstream 25681 52351762 ~ 52356072 (+) True G621583
TU707133 lncRNA downstream 164412 52490493 ~ 52490696 (+) True G621720
TU707137 lncRNA downstream 174742 52500823 ~ 52501078 (+) True G621724
TU707159 lncRNA downstream 223818 52549899 ~ 52550128 (+) True G621746
XM_021609631.2 mRNA upstream 892763 51429630 ~ 51433065 (+) True LOC110527974
XM_036983477.1 mRNA upstream 907479 51252126 ~ 51418349 (+) False LOC110528964
XM_036983483.1 mRNA downstream 119038 52445119 ~ 52489548 (+) False si:ch211-236d3.4
XM_036983484.1 mRNA downstream 119040 52445121 ~ 52489548 (+) False si:ch211-236d3.4
XM_021609634.2 mRNA downstream 143652 52469733 ~ 52489548 (+) True si:ch211-236d3.4
XM_021609638.2 mRNA downstream 185189 52511270 ~ 52548815 (+) False LOC110527978
XR_005052600.1 mRNA downstream 185189 52511270 ~ 52548815 (+) True LOC110527978
TU705038 other upstream 1251821 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2021596 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 2705660 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 2705660 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 3498601 48826827 ~ 48827227 (+) True G617133
TU707063 other downstream 65267 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 165087 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 1427825 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 2497556 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 2721215 55047296 ~ 55052688 (+) False G624962

Expression Profile