RNA id: TU707232


Basic Information

Item Value
RNA id TU707232
length 418
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G621812
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52658988 ~ 52659405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCTATCGAGATAAACAATAAAAACATAAAAGAAAGTAAAGCCTACTAAAAATCCAACAAATAATTGTGTTACAATGATGACAAGTCATACACAAGTAGGCTACTTCATTCCCTCTGGAATTGTATTCAATATGCTCTCTCATTATTGCCACTATAGACTTACACACTGTCAAGGACAGTGTGAGAGGAATAGGCAACATGAATTAGAATTCAATCAAACAAACTCCTTGCACTACCAACTTTGTTAGTATCATCTGCCCTCTAGTGGAGTTACCTTAGCCATCAATTACTCAATATTTTCCATCCCTCTGTCAAATCCACATTCATTCATGCATGCATCCGTCAATTACATTATAGGGACTAAATGTaggctattgaatacagattgggATGATTATAAACAACACTATTTGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707169 lncRNA upstream 91477 52567156 ~ 52567511 (+) True G621756
TU707168 lncRNA upstream 92096 52566672 ~ 52566892 (+) True G621755
TU707159 lncRNA upstream 108860 52549899 ~ 52550128 (+) True G621746
TU707137 lncRNA upstream 157910 52500823 ~ 52501078 (+) True G621724
TU707133 lncRNA upstream 168292 52490493 ~ 52490696 (+) True G621720
TU707238 lncRNA downstream 7726 52667131 ~ 52667553 (+) True G621816
TU707244 lncRNA downstream 16333 52675738 ~ 52676043 (+) True G621821
TU707245 lncRNA downstream 16848 52676253 ~ 52676622 (+) True G621822
TU707273 lncRNA downstream 69122 52728527 ~ 52728802 (+) True G621850
TU707289 lncRNA downstream 114207 52773612 ~ 52783288 (+) True LOC110527982
XM_021609638.2 mRNA upstream 110173 52511270 ~ 52548815 (+) False LOC110527978
XR_005052600.1 mRNA upstream 110173 52511270 ~ 52548815 (+) True LOC110527978
XM_036983483.1 mRNA upstream 169440 52445119 ~ 52489548 (+) False si:ch211-236d3.4
XM_021609639.2 mRNA downstream 229 52659634 ~ 52669736 (+) False LOC110527979
XM_021609640.2 mRNA downstream 229 52659634 ~ 52669736 (+) False LOC110527979
XM_036983486.1 mRNA downstream 229 52659634 ~ 52669736 (+) False LOC110527979
XM_036983487.1 mRNA downstream 229 52659634 ~ 52669736 (+) True LOC110527979
XM_036983488.1 mRNA downstream 22310 52681715 ~ 52691282 (+) False LOC110527981
TU707108 other upstream 165748 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 267355 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 1584981 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2354756 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3038820 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 1094501 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 2164232 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 2387891 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 2387891 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 2411227 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile