RNA id: TU707538


Basic Information

Item Value
RNA id TU707538
length 221
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G622088
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52720741 ~ 52720961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtacagaggcccattatcagcaaccattactcctgtgttccaatggcactttgtgttagctaatccaagtttgtcattttaaaaggctaattgatcattagaaaacccttttgcaatgatgttagcacagctgaaaactggcagagttgcaaagaaaaagccatatctcagactggccaattaaaataaaagattaagacgggcaaaagaacacagacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707511 lncRNA downstream 46023 52673023 ~ 52674718 (-) True G622061
TU707506 lncRNA downstream 48252 52669452 ~ 52672489 (-) True spcs1
TU707441 lncRNA downstream 157981 52562549 ~ 52562760 (-) True G621993
TU707436 lncRNA downstream 163185 52557243 ~ 52557556 (-) True G621988
TU707401 lncRNA downstream 213770 52506727 ~ 52506971 (-) True G621955
TU707836 lncRNA upstream 127932 52848893 ~ 52857351 (-) True G622357
TU707837 lncRNA upstream 128722 52849683 ~ 52857693 (-) True G622358
TU707838 lncRNA upstream 129530 52850491 ~ 52858404 (-) True G622359
TU707841 lncRNA upstream 138990 52859951 ~ 52860161 (-) True G622362
TU707843 lncRNA upstream 140278 52861239 ~ 52861456 (-) True G622364
XM_021609642.2 mRNA downstream 23898 52691341 ~ 52696843 (-) True gnl3
XM_021609641.2 mRNA downstream 23904 52691341 ~ 52696837 (-) False gnl3
XR_005052744.1 mRNA downstream 26265 52694402 ~ 52694476 (-) True LOC118965418
XR_005052748.1 mRNA downstream 26722 52693944 ~ 52694019 (-) True LOC118965422
XR_005052746.1 mRNA downstream 27642 52693025 ~ 52693099 (-) True LOC118965420
XM_021609654.2 mRNA upstream 64706 52785667 ~ 52826537 (-) False LOC110527983
XM_021609656.2 mRNA upstream 64706 52785667 ~ 52826537 (-) False LOC110527983
XM_021609657.2 mRNA upstream 64706 52785667 ~ 52826537 (-) False LOC110527983
XM_021609658.2 mRNA upstream 64706 52785667 ~ 52826537 (-) False LOC110527983
XM_021609659.2 mRNA upstream 64706 52785667 ~ 52841769 (-) True LOC110527983
TU705034 other downstream 1762201 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 2414585 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 2784460 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 3423493 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 3524771 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 584575 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 2351518 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 2443531 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 2712495 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3970362 56691323 ~ 56696091 (-) True G627254

Expression Profile