RNA id: TU707824


Basic Information

Item Value
RNA id TU707824
length 4480
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G622347
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52898545 ~ 52903132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCCTGTATgcttgttttattttattgataAAAAAATCCAACCACACATCttacaaaagaaaagaaaaccaACAGGACACTGACATCATAGCACACTGTTTTACAAAAGATTGTTCTGTTGGAGGTTCATATCCACCCAACATACACACAGATGCTTTAACAAAATGTAAATTAATACTGCACTAAAATTGAGAAAATAAAAACATCTAATAAATTAGACATCTAATAAATAGTATATATCATTCAATGGTTCATGTACAAAGCTGAAATAAGATTGTGTTAATAGTTATCTCAAACAATATTTCTTCAGAGAGCAAATCAGAGAAAATAAAGGCAGGTGTGTTTATTATGCAAAAATAGATGTACAGCTACCGATACGAGTAGTaactaaaataaaatatttatatatttggaTTCTCTAATTTCTATTGTATTTACATTAAAAGTCGTGTGGCCTCATTATGTGCAGTGATGGATTTCTCCAACTGTTTTATGCATACATCATGTGTTaataaatgtgtttataaaaTGCCCAAACATAATTGTCAAAAACTAAACACACAAAGTACATTGCATTTGATTTCAGTCCATAAGTGCATCTTTTTCTCTCCATCACAGGGTCCGACATATGCCAAGTCTTTGGTGCCAACATTGATCCTGACATTTGATGACTTAGGGCGACATACAGTCAAGGAGGTTGCAGTGTTTAACCGACAGATTGTTTGTGGAGGAGACTGTACTAAAGAGTCCCATATCATTTCAAAGACGCATACATATATTTGCATGCATGTGAATGCACACAAAGTCATCATGGAATGATTACAATGGATGTTTCTTGTGGAGTTCTGTTTGGGTCAAGGGCCATTACGAAAACCATTTAAACCACTTTAAAACCATATTCACTTTAGACTCGCTGGATAAGCCTATATTAGATTGTAAAACATATTCTGCCTACCTTTTGATTTCAAATAACAAAGACCTGTGAATGTAGGGATAGGTTAGGCTAATCATGtagttaaaaaaacaaacaatgacATCTAACCCAATCTCTTTTCAGTAACATAACGGTGTTCCACAttttgtagaacattttgagaaaTACTCCAACTACTATTACGTAAGattttttttgtgacaaaacaaccaacattGTGGATGAAAAAATGCAGCTAAAAACACTTCTCAAAATGCCTTATAAAATGAAAGGAAAACTTATTGAAGTGGCACAGCAGTCATAGACAGGAACCTCTACATCAAGAGGTGGAGTCGCCTGAATCAGCAGGGTTGTCAGCTATGTGTCACAAAACATAACTGAACAATATAACAGCCCCTACAGTGCTGAACTATGCAAAGGCATTGTGGAGTTACAATAACAAAAATCACAACTTTTCTAAAGGGTGTAAAAGCACTTTCAGGATGAAGCAGACCTTGGTACGGCTGGAAGCCACATTACATACTAGACCCTGTTTGAAAGGAAGCCTGTTGTGAGGGACTTCAGTTTAGTTTTAGCGGGGGGTTACGCTCATATTAGCATGCAGTGAAATAGGCGTACGTTGCTTTTCAACAGTTTGCTCTTATGAAGAAGCGGATGAGTGATTCCAATGATCAAATCTACTGTCATATTCAAGGCGCCAACTACCATCACTAGTGTCAGAGTAGAAAATATTTCAACTAGTCCTATGATTTCATAGTGTAACATTCATGCTCATGGGTATTGCTTGGGAATTAAATATTACATGTACACATACAGTAGTACTTGGAGCCAAAAAGTATGCACCCAATGTTTGATAACATTTTTGTAACAGTGCTGTAATTCACTAAGAAATAAACCTCATAAAAAATGACTCTttatgatttgatttatttttccaTAAGAAACAAATATTTCTAAAATAATCAAAAATCTGGACAGAAGTTAAAAATGAgttggtaaaaaaaatatttacatgGCATACAATGTCTTGAGGGTCTTGATTGATCCAGTAAATAATTTAGGTCATAAACAGAGGGTCTGTGTAACAAAGATCCATATTGTTATATGTAGCCTCAGACATCCCCTATGTGGAACACAATAACGATTCGCTGTGGTTTAGTCTCTGGACTGGCAAAGCAAGTCAAGTTGTGGTACGATACAGTAGAAGGCCTTTCATTGAGGGTACTGCTCCCCCTGTTGGAAAACAgtacaaatgtcatatttcaaTTCCACAACAACTGCTCAAATTTGCTGTGGCTACAGTGTTGCTACACAGTATGCTCTGTTTCATCAAGTAACAAAGGGAACAAAAACACAAATTCTGAACTTTAAAATCATCCCTTACTTCAATGAGAAGTACTGAGACCTACATAAGAGACATACGCATGGATATCTAAACTGACAAAATGATTAAGGCAACAGACAAAAtaagagaaaataaaataaaagtaactTGGCGGTGACCGTTGTATAATTGAAGACCCCCCTTTTCGTTCTACTAACCATCTACCATTCCAACCCACCTTCTGCCACCCATGTCCCTGCTCCCACCAAGTTAGTGTTGTGATAAGAAGAGAAAGGAGCTAGAGACGTTGAGACAGGGGATCGGGAGGGGGGATCGGGGCATCTGTTCTCTGCTTGGTGAAGATGCCTGAAATGTAATGACAACCAGTGTGTCAGTTTAGTAGTCAGTTTGCACGCAGTTAGTGAGTGGTCCCCTCAGGTTGGGGTGGCCAGAGAGGGTTCAGGGCCGGGCCTCATCAGCGGGAGTGgaacgagaggagaggggagggacaggTGCTTAGAGCTGAGAGTCAGCCCCCAGGCTGTTGAGCTCCTCTGGCGAGTGCTTCTCTCCACCAGTGCCAGACGACTGGCGGAACCCGGCCGAGATCTCATCAAACGTCCGGCCCTTGGTCTCAGGCACCTTGAAGTAGGTGAAGATGAAGAAGCTGAGCAGCAGTATGGTGAAGATGACAAAGACATAAGGGCCACACAACTCCTGTAGGGTGAGacggagaagagaagaagagagaacatTGATGACACAGTTTATTAAACAGTGGGCTCCAAACAAGCGTGTATTCAAACTACCAGTTCATATATATCAAGATTAGTATTTCTACAACATTTACCATGTTGAGCATCTGCCTAAGAAGGTTGTGCTCAGTGCTTACCTCTACATACTGGAAGGCCATGCCCACTATGAAGTTGGCAGTCCAGTTGGAGAAGCCAGCCACAGCGAAGGCCGAGGGCCGGGGACCCTGGGAGAACAGCTCAGCCACAATGAACCAGGGGATGGGACCCGGGCCGATCTCAAAGAACGCCACAAAGGCAAAGATGGCCACAATACTCACGTAGGACATCCATGGCAGCTTGTCCTGATGGAGGACAAACAGACAGCAGGGGGTTAAACTACTGGTATTTATTCTACATATTACATTAACAAGGACTAGTATGAAAAAAACAAGTGTATTTCCTCATTGATTCCTTATGAGAGCTGCTACCATTATGTGAAGTGTGTTATAGTTAGTCTAAGTACCAGCAGAGCCAGAGCGATGGTCATCAGGACGGCAGCGCCTGCCATTCCTATCAGCCCCAGCAGGTGGAGAGACCTGCGTCCAGCACGCTCCACCACAAACAGCTGAGGAACGGAGAGAGGATTGAATTATACTGTCTAAACACAAATTAAGTGCATCATGCATCATGTGCACCAAAAATGACACAAAATGACACACCCGTATCTGCCATAGTTACTCACCGACACCACAGTGAAGGCCGTGTTGACCACACCGGCACCAATTGTAGCATAAACAGGCTGAGCAACTCCGGCCTTCTCAAAAATACGGGTAGAGTAGTAGAAAAacagcgttgatGCCAGAAAGCTGCTGGGAGAGCTGGAGCATGATAGCGATGAAGATGGGCTGGCGGTAGAGTGGCGAACGGAACAGCTCTAGGATGGTCACCTTCTTCTCCCTCATCATCTGCCTGGCCTCCTCCTTCATCTCCTGCATGTCTGCACTTACGTCTGTGGTCCCACGCAGCTTCTTCAGGActgacagggacagggagagaacgGAGGTTACATTACAGTCTGCTAGGGCTGGGTCACTCCATACCTGGTAAATTCAGACAATTCAGGGATGAGTTTAAATTCAACTAATGAATTGAAAATAAGCCATTATTTTAGATTCAGAATCTTTTCAAGTCATTCAATCTGACAGACCTGAAATTGGCTGAACTGATGACatatgaatgtgtgtttgtgtataaatGTACTCTACTCACCAGTTTTGGCCTTGTTCTCCTCGTTGCGGTTGATGAGGAGGAAGCGGGGGCTCTCAGGGCAGAAGGGCAACAGGGCACACTGCGCCAGGGCTGGGATGAAGGTGAAGCCCAGCAGGAAGGGCCACAGATATGTGTTCCCCATTAAGGCCTCCATGCCAAAAACCTGAACCAAAACACATCGTTAGACCACCATCAGATTAAGCCTTCTTGTGCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707853 lncRNA downstream 16934 52878752 ~ 52881611 (-) True G622374
TU707845 lncRNA downstream 25814 52869067 ~ 52872731 (-) True G622366
TU707843 lncRNA downstream 37089 52861239 ~ 52861456 (-) True G622364
TU707841 lncRNA downstream 38384 52859951 ~ 52860161 (-) True G622362
TU707838 lncRNA downstream 40141 52850491 ~ 52858404 (-) True G622359
TU707994 lncRNA upstream 220133 53123265 ~ 53123699 (-) True G622512
TU707996 lncRNA upstream 222027 53125159 ~ 53125391 (-) True G622514
TU707999 lncRNA upstream 231707 53134839 ~ 53136930 (-) True G622517
TU708010 lncRNA upstream 236940 53140072 ~ 53140363 (-) True G622528
TU708016 lncRNA upstream 242284 53145416 ~ 53145784 (-) True G622534
XM_021609659.2 mRNA downstream 56776 52785667 ~ 52841769 (-) True LOC110527983
XM_021609654.2 mRNA downstream 72008 52785667 ~ 52826537 (-) False LOC110527983
NM_001160501.1 mRNA upstream 187305 53090437 ~ 53105864 (-) True pad
XR_005052607.1 mRNA upstream 466502 53369634 ~ 53373429 (-) False LOC118965299
XR_005052608.1 mRNA upstream 466502 53369634 ~ 53373429 (-) False LOC118965299
XM_021609701.2 mRNA upstream 477369 53380501 ~ 53400793 (-) False LOC101268938
XM_021609702.2 mRNA upstream 477369 53380501 ~ 53400793 (-) True LOC101268938
TU705034 other downstream 1940005 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 2592389 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 2962264 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 3601297 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 3702575 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 402404 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 2169347 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 2261360 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 2530324 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3788191 56691323 ~ 56696091 (-) True G627254

Expression Profile