RNA id: TU707639


Basic Information

Item Value
RNA id TU707639
length 206
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G622182
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52908609 ~ 52908814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtcggcagtaaaaggggtccacgccagttggcaaaataggtattgtagcccaagaactggccgatggacctcttcagctagccgggagaggctaactggtgcttgcttcgggacagagacgttagccaggagtagccactcggatagctagctgcaatgatccaggtgaaaaggttcagagcttgcggtaggaatctgtagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707289 lncRNA upstream 125321 52773612 ~ 52783288 (+) True LOC110527982
TU707273 lncRNA upstream 179807 52728527 ~ 52728802 (+) True G621850
TU707245 lncRNA upstream 231987 52676253 ~ 52676622 (+) True G621822
TU707244 lncRNA upstream 232566 52675738 ~ 52676043 (+) True G621821
TU707238 lncRNA upstream 241056 52667131 ~ 52667553 (+) True G621816
TU707680 lncRNA downstream 50164 52958978 ~ 52976643 (+) True G622216
TU707774 lncRNA downstream 195736 53104550 ~ 53116589 (+) True G622304
TU707786 lncRNA downstream 230739 53139553 ~ 53139766 (+) True G622316
TU708020 lncRNA downstream 239495 53148309 ~ 53148515 (+) True G622538
TU708197 lncRNA downstream 448577 53357391 ~ 53403946 (+) True G622641
XM_036981846.1 mRNA upstream 5473 52882500 ~ 52903136 (+) False glut1a
NM_001124276.1 mRNA upstream 7320 52882528 ~ 52901289 (+) True glut1a
XM_021609648.2 mRNA upstream 125317 52736601 ~ 52783292 (+) False LOC110527982
XM_036983489.1 mRNA upstream 125317 52737984 ~ 52783292 (+) False LOC110527982
XM_021609651.2 mRNA upstream 125317 52737985 ~ 52783292 (+) False LOC110527982
XM_036983493.1 mRNA downstream 14063 52922877 ~ 53091054 (+) False LOC110527984
XM_036983495.1 mRNA downstream 140909 53049723 ~ 53091054 (+) False LOC110527984
XM_021609666.2 mRNA downstream 156453 53065267 ~ 53091054 (+) False LOC110527984
XR_005052603.1 mRNA downstream 156454 53065268 ~ 53088963 (+) False LOC110527984
XR_005052602.1 mRNA downstream 156454 53065268 ~ 53091054 (+) False LOC110527984
TU707108 other upstream 415369 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 516976 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 1834602 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2604377 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3288441 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 845092 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 1914823 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 2138482 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 2138482 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 2161818 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile